Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0867 ATGTCGCTGAGGCCTAATGCCAGGACCGAGAGTCGCCGCAACCGCTACAAGGTTGCTGTCGACTCTGATGAGAGTCGCCGGAGGAGGGAGGATAACATGGTGGAGATCCGAAAGAATAAGCGCGAAGAGAGCCTCCAGAAGAAGCGTTGCAAAGGTATCCAAGCTCACCTGCAGTTCCAAACTCCTCTTCAAGTTTCCACCAATGTGGAGAAAAAGTTAGAGAGTCTTCCTGAGATGGTTGCTGGGGTCTTGTCTGAAGATAACACCCAGCAACTGGAAGCAACTGCGCAATTTCGGAAGCTTCTTTCGATTGGGTCCTTCCCTCCAATTGAGGAAGTTATTCAGTCTGGTGTTATCCCGCGTTTTGTTCAGTTTCTGGATAGGGAGGATTTCTCTGAAATTCAGTTTGAGGCTGCATGGGCTCTCACAAACATAGCATCTGGAACTTCTGAGAACACCAAGGTGGTGATTGATCATGGAGCAGTCCCGATATTTGTCAAGCTACTTAGTTCACCTAGTGATCATGTTCGGGAGCAGGCGGTGTGGGCATTGGGAAATATTGCTGGTGACTCCCCTAGGTGTCGTGATCTTGTTCTCAGCCATGGCGCCCTGATCCCACTATTAGCCGAGTTGAATAATGAGCATGCAAAAATTTCAATGCTGAGAAATGCCACATGGACTCTGTCAAACTTTTGCAGGGGAAAGCCACAACCTCCATTTGAACAGGTGAAGCCAGCACTACCAACTCTTGAGTGTTTGGTTCATTCCAATGATGAAGAGGTTCTAACAGACGCATGCTGGGCACTATCATATCTTTCTGATGGAACAAATGACAAAATTCAAGAAGTTATTGAGGCAGGTGTATGTACCCGATTGGTGGAGCTCCTTCTGCATCCGTCGCATACAGTGGTGATTCCTGCTCTTCGCACAGTGGGTAATATTGTGACTGGAGATGATATGCAGACTCAGGCTATTATAGACCATGGTGCACTCCCATGCATTTTGAAGCTGTTGAAAAGTAACCGTACAAAAAGTATCAAGAAAGAAGGTTGTTGGACTATATCAAACATTGCAGCTGGAAACAAAGAACAAATACAGGCTGTTATTGAAGCTGGTGTGATCGCTCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACGTTAAAAAAGAAGTTGTCTGGGCAATCTCAAACGCTACATCTGGTGGTACTCATGAGCAGACCAAGTACTTGGTGAGCCAAGGTTGCATTAAGCCTCTATGTGATATGCTTGTTTGCCCCGACCCAAGAATTGTCACTGTCTGTTTAGAAGGTCTAGAGAATATTCTGAAGGTTGGGGAATCTGAGAAGAGCTTGGGTAATACTGGAGATGTCAACTTGTATGCTCAGATGATAGATGATGCTGAGGGATTGGAGAAAATTGAAAACCTGCAGAATCATGACAACAATGAGATATATGAGAAGGTTGTTAAAATTCTAGAAACATATTGGCTGGAAGATGAAGATGAGACACTACCTCCGAGATATAATGCTCCAGGTGGTTTCAATTTTGGAAGTAATGAGCTTTCAGTCCCATATGGTGGATTCTACTTCAGTTGA 1599 0.4497 MSLRPNARTESRRNRYKVAVDSDESRRRREDNMVEIRKNKREESLQKKRCKGIQAHLQFQTPLQVSTNVEKKLESLPEMVAGVLSEDNTQQLEATAQFRKLLSIGSFPPIEEVIQSGVIPRFVQFLDREDFSEIQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDHVREQAVWALGNIAGDSPRCRDLVLSHGALIPLLAELNNEHAKISMLRNATWTLSNFCRGKPQPPFEQVKPALPTLECLVHSNDEEVLTDACWALSYLSDGTNDKIQEVIEAGVCTRLVELLLHPSHTVVIPALRTVGNIVTGDDMQTQAIIDHGALPCILKLLKSNRTKSIKKEGCWTISNIAAGNKEQIQAVIEAGVIAPLVNLLQNAEFDVKKEVVWAISNATSGGTHEQTKYLVSQGCIKPLCDMLVCPDPRIVTVCLEGLENILKVGESEKSLGNTGDVNLYAQMIDDAEGLEKIENLQNHDNNEIYEKVVKILETYWLEDEDETLPPRYNAPGGFNFGSNELSVPYGGFYFS* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0867 532 Gene3D - 10 50 IPR036975 GO:0006606
Lan19g0867 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 329 372 IPR000225 GO:0005515
Lan19g0867 532 SUPERFAMILY ARM repeat 5 503 IPR016024 -
Lan19g0867 532 MobiDBLite consensus disorder prediction 8 32 - -
Lan19g0867 532 PIRSF Importin_alpha 2 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lan19g0867 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Lan19g0867 532 PANTHER IMPORTIN ALPHA 2 522 - -
Lan19g0867 532 SMART arm_5 190 233 IPR000225 GO:0005515
Lan19g0867 532 SMART arm_5 149 189 IPR000225 GO:0005515
Lan19g0867 532 SMART arm_5 235 274 IPR000225 GO:0005515
Lan19g0867 532 SMART arm_5 404 444 IPR000225 GO:0005515
Lan19g0867 532 SMART arm_5 318 359 IPR000225 GO:0005515
Lan19g0867 532 SMART arm_5 361 401 IPR000225 GO:0005515
Lan19g0867 532 SMART arm_5 276 316 IPR000225 GO:0005515
Lan19g0867 532 SMART arm_5 106 147 IPR000225 GO:0005515
Lan19g0867 532 Pfam Atypical Arm repeat 459 505 IPR032413 -
Lan19g0867 532 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Lan19g0867 532 Pfam Armadillo/beta-catenin-like repeat 277 315 IPR000225 GO:0005515
Lan19g0867 532 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Lan19g0867 532 Pfam Armadillo/beta-catenin-like repeat 361 400 IPR000225 GO:0005515
Lan19g0867 532 Pfam Armadillo/beta-catenin-like repeat 191 233 IPR000225 GO:0005515
Lan19g0867 532 Pfam Armadillo/beta-catenin-like repeat 405 442 IPR000225 GO:0005515
Lan19g0867 532 Pfam Armadillo/beta-catenin-like repeat 246 273 IPR000225 GO:0005515
Lan19g0867 532 Pfam Armadillo/beta-catenin-like repeat 108 147 IPR000225 GO:0005515
Lan19g0867 532 Pfam Armadillo/beta-catenin-like repeat 319 359 IPR000225 GO:0005515
Lan19g0867 532 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Lan19g0867 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Lan19g0867 532 MobiDBLite consensus disorder prediction 1 32 - -
Lan19g0867 532 Gene3D - 74 498 IPR011989 -
Lan19g0867 532 PANTHER IMPORTIN SUBUNIT ALPHA 2 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0867 Lan-Chr19 16146329 16150307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0867 133 384 U-box Gene Family AT3G46510 23.320 9.70e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0867 K15042 - gmx:100808498 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0636 4 8705247 8709281 Lan19g0867 19 16146329 16150307 LSH
Lan16g0193 16 1516623 1521012 Lan19g0867 19 16146329 16150307 LSH
Lan12g0883 12 15876981 15881492 Lan19g0867 19 16146329 16150307 PCT
Lan19g0867 19 16146329 16150307 Lan12g0883 12 15876981 15881492 PCT