Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0865 ATGTCAGAAGGGATCAGTGTGGTGCTGGAATCATCTGAGAATGGCACCGATCTGTCTCAGGATGACATTGGCACCATTGAGGAAATTCCAGAGGAAACGATTTTGTCAAGACAAACTTCTATCAACCTTGTTCCTTTTATTGGTCAAAGATTCATTTCGCAAGAAGCTGCTTATGAATTTTATTGCAGTTTTGCTAAGCAATGTGGCTTTTCTATTCGACGACACCGCACTCGTGGAAAAGATGGCGTTGGCCGGGGAGTTACTAGGCGGGACTTTACTTGCCATCGTGGTGGATATCCCCAGAATAAACCTTCCGATGATGGTAAGATGCAAAGGAACCGCAAGTCATCTCGCTGTGGCTGTCAAGCATATTTGCGTATTGTTAAAAGGGCAGATTTTGATGTTCCTGAATGGCGTGTTACTGGTTTTAGCAACATACACAACCATGAGTTGCTAAAAGCCAATGAGGTGCGTCTTCTTCCAGCATACTGTACAATATCCCCTGATGACAAGAGTCGTATATGCATGTATGCTAAAGCTGGAATGTCAGTGAGGCAAATGTTAAGACTAATGGAGCTAGAGAAAGGCATCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTGAGAAACTTGTTGCAGTCTTTCCGAAATGTTGATAGAGATATTGATGCTATTGATCTTATAGCTATGTGCAAAAGGTTAAAGGATGAAAATCACAACTTCAAGTATGAGTTCAAGATAGATAGTAATAACAGGCTTGAGCATATTGCATGGTCCTACAGCTCGTCCATTCAATCATATGAGGCATTCGGAGATGCTGTGGTTTTCGATACAACCCACCGAATAGATGCCTATGACATGCTGTTGGGAATTTGGCTTGGAGTGGACAATAATGGGATGGCTTGTTTCTTTAGTTGCACACTTCTACGCGATGAAAATATGCATTCTTTTTCATGGGCTCTAAGGGCTTTCTTGAGCTTCATGAAAGGAAAGGCTCCACAAACATTATTAACTGATCATAACATGTGGCTGAAAGAAGCTATTGCTGTTGAAATGCCTGAAACTAAACATGCCTTTTGCATATGGCATATTCTTTCTAAGTTCTCTGACTGGTTTTCTATACTTCTTGAATCACAATATGATGAGTGGAAAGCTGAGTTCCATCGGCTCTACAATTTGGAAATGGTGGAGGAATTTGAAGAAGGTTGGAGGCAAATGGTTGATAAGTATGGACTCCGTGTAAATAAGCACATTATTAGCCTATATTCGTTAAGGACATTCTGGGCTTTACCTTTCTTGAGGCGTTACTTCTTTGCTGGATTGACCAGCACCTGTCAGTCTGAGTCCATCAATGCTTTCATACAACGGTTCTTGAGCGCCCAATCTCAACTAGATTGTCTTGTAGAGCAGGTTGCTGATGTTGTTGATTTTAATGACCGGGCTGGAGCAAAGCAAAAGATGCAACGAAAACTACAAAAAATGTCCCTCAAAACAGGTTCACCCATTGAATCTCATGCTGCCACTGTACTTACTCCTTATGCGTTAAGTAAACTCCAGGATGAGCTAGTTTTGGCGCCGCAATATGCATCATTTCTGGTTGATGAAGATTGTTTCCAGGTCAGACACCACACTCAGACAGATGGAGGATGCAAAGTATTATGGGTTCCTTGTCAAGAACACATCAGCTGCAGCTGCCATCTGTTTGAGTTTTCAGGCATCTTATGTAGACATGTGCTACGCGTCATGTCAATTAATAACTGTTTTCACATCCCTGACCAATATCTACCTGCCCGTTGGCGAGGCAACAGTTTATCTTCTATCAACCACTTTCGTGGTACAACTAATAGGGACCAATCTGAGAGAATACAATATTTGGAATCCATGGTTTCAACACTTATAATGGAATCCATTGAAACAGACGAGCGCCTCGATGCTGCTTGCGAGCAAGTTTCCATGGCACTATCGCGTATCAAAACCCTTCCTAGGCCAGCGCCCGCAGTAAATGACATGGGATATAGTTATCCATCGGATTCATTGATCCTGCCAGAGGTTGAAGATACTGATGGAATAATTCATGGTTTTACAATTGCAAATCCCCATGATTCTATGGCATTCGGAAAACCGAAGGAGAGAATGGCAAGAGATGGAACAGATCTCTCCAGGAAGCGTAGGCAGTTTTCAGGGCAATTATGTGTGCAATATGATGCATCTGATTGCTCATTAATGGGAGGTGATAATTTGGGTGCAGATGCATTAGGTTATTTATAG 2271 0.4205 MSEGISVVLESSENGTDLSQDDIGTIEEIPEETILSRQTSINLVPFIGQRFISQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQNKPSDDGKMQRNRKSSRCGCQAYLRIVKRADFDVPEWRVTGFSNIHNHELLKANEVRLLPAYCTISPDDKSRICMYAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDRDIDAIDLIAMCKRLKDENHNFKYEFKIDSNNRLEHIAWSYSSSIQSYEAFGDAVVFDTTHRIDAYDMLLGIWLGVDNNGMACFFSCTLLRDENMHSFSWALRAFLSFMKGKAPQTLLTDHNMWLKEAIAVEMPETKHAFCIWHILSKFSDWFSILLESQYDEWKAEFHRLYNLEMVEEFEEGWRQMVDKYGLRVNKHIISLYSLRTFWALPFLRRYFFAGLTSTCQSESINAFIQRFLSAQSQLDCLVEQVADVVDFNDRAGAKQKMQRKLQKMSLKTGSPIESHAATVLTPYALSKLQDELVLAPQYASFLVDEDCFQVRHHTQTDGGCKVLWVPCQEHISCSCHLFEFSGILCRHVLRVMSINNCFHIPDQYLPARWRGNSLSSINHFRGTTNRDQSERIQYLESMVSTLIMESIETDERLDAACEQVSMALSRIKTLPRPAPAVNDMGYSYPSDSLILPEVEDTDGIIHGFTIANPHDSMAFGKPKERMARDGTDLSRKRRQFSGQLCVQYDASDCSLMGGDNLGADALGYL* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0865 756 Pfam MULE transposase domain 275 367 IPR018289 -
Lan19g0865 756 MobiDBLite consensus disorder prediction 1 20 - -
Lan19g0865 756 Pfam SWIM zinc finger 561 583 IPR007527 GO:0008270
Lan19g0865 756 MobiDBLite consensus disorder prediction 79 114 - -
Lan19g0865 756 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 8 721 - -
Lan19g0865 756 Pfam FAR1 DNA-binding domain 59 152 IPR004330 -
Lan19g0865 756 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 721 IPR031052 GO:0006355
Lan19g0865 756 ProSiteProfiles Zinc finger SWIM-type profile. 539 587 IPR007527 GO:0008270
Lan19g0865 756 SMART 26again6 562 589 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0865 Lan-Chr19 16134660 16138796 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lan19g0865 MULE 1.2e-19 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0865 - - gmx:100778434 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0781 4 9814205 9817568 Lan19g0865 19 16134660 16138796 LSH