Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0862 ATGGGAAGAGCACCTTGCTGTGAGAAAGTGGGATTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTGACTGATTACATTCAAGAAAATGGTGAAGGATCATGGAGGTCCTTGCCTAAGAATGCAGGTTTGTTAAGGTGTGGGAAGAGTTGCAGATTAAGATGGATAAACTATTTGAGAGCAGATGTTAAGAGAGGGAACATCACTCCCGAAGAGGAAGAACTCATTGTCAAGTTGCATGCTGTTCTTGGTAATAGGTGGTCTGTGATAGCAGGACAATTAGAAGGGCGAACAGATAATGAGATAAAGAATTATTGGAACTCTCATTTGAGAAGAAAGATTTACTGCTTCATGAGATGTTTAAATAATGAGTCTTTGCCACCCATTGATTTGGCTAATATGGCTTCTACATCCAAAAGAAGAGGTAAAGGAACAAAGAATCAAGTTGAAGTAGCCATGGAAGAGGACCACAACATGGCTTTGAACAAAAACTCTCATGAACCAATGCCTCAAAGGAATGCAACTTCACAAGTTTGTTTTAATGGTGGAGAACCTGATAAAGAAATTTCCATGATGGATATTTGTTATGAAATGGATCAGGGCAATGGTTATTATAATAATAACAATAATAATAATACAGTTGCATCATTATACCCTAATATGAATGGAGATGTTGAAGGTTTGGGACCATACCAATGGCTAGATGATGAAATTAGGAAACTTAGTCACATGTTTGAAAATGGGGTACTTGTAAATAATCTAAGTGTTAATGGGAATGTAACCCTTAAGGATGAGCCTAATGGAAATGACTCATATGGTCATATGCAAATGGATACAATGGGAACTAGTGAGGATAAAAAAAGTGCTAGTGTTTGGAACTCATCAAATGAAGATAATGGAGGTTGGTATAACACTAGTTGTTTATCAGTTAATTCTGTTAGTGATTATCAATGGCCTAATTGGGATTTCACAAGTAGTACTCAATCTCATAATCAATGGGACCTTTGTGAACAAGACCAAAACCAATCTTGCTTGTGGGGTATTGGAATTGGTGAAGTAGATGGGTTTCATCATTGA 1083 0.3712 MGRAPCCEKVGLKKGRWTAEEDKILTDYIQENGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPEEEELIVKLHAVLGNRWSVIAGQLEGRTDNEIKNYWNSHLRRKIYCFMRCLNNESLPPIDLANMASTSKRRGKGTKNQVEVAMEEDHNMALNKNSHEPMPQRNATSQVCFNGGEPDKEISMMDICYEMDQGNGYYNNNNNNNTVASLYPNMNGDVEGLGPYQWLDDEIRKLSHMFENGVLVNNLSVNGNVTLKDEPNGNDSYGHMQMDTMGTSEDKKSASVWNSSNEDNGGWYNTSCLSVNSVSDYQWPNWDFTSSTQSHNQWDLCEQDQNQSCLWGIGIGEVDGFHH* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0862 360 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan19g0862 360 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 320 - -
Lan19g0862 360 CDD SANT 16 61 IPR001005 -
Lan19g0862 360 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lan19g0862 360 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan19g0862 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan19g0862 360 PANTHER MYB TRANSCRIPTION FACTOR 2 320 - -
Lan19g0862 360 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan19g0862 360 Gene3D - 71 116 - -
Lan19g0862 360 SMART sant 13 63 IPR001005 -
Lan19g0862 360 SMART sant 66 114 IPR001005 -
Lan19g0862 360 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan19g0862 360 CDD SANT 71 112 IPR001005 -
Lan19g0862 360 Gene3D - 13 66 - -
Lan19g0862 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0862 Lan-Chr19 16106639 16109003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0862 1 337 MYB Transcription Factor Family AT5G49330 45.028 8.23e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan19g0862 Myb_DNA-binding 4.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0862 K09422 - gmx:100819041 439.884