Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0847 ATGGAAAACGGCAATGAGTTTTTCACACACACTTCTGATCAAGGTTGTTTCAGAAAATCAAGAATAAGAGGAAAAGGAAGAGCAACAAAAATGGCTTCTTCGCAGGTTAAAATTACTTCCTCTTCACCCTTTGGTTGCGTTCTTAGGGATCATAACCAAGTTGATGGATACAGAGAAAGTACTGTTTTCCAATTGAAGATGAAGAATTTTATCAAAGACCACCTTAACATGTCCACAGACTCAAAAGCAAGTGAGAAGAACAACAATTCTTTCAAAGCATCCCAGAAGAATAATATTGGCAGTCTTCGTTTCATGAAAAGCAATGACAACAGCAACAAGGATAAGCATGAGTCTTGTTTCGCTTCGTTGATTAGCCCAAGACACTCACGGCTTCTCGATCGATGGGTTGCGAGACAAGCCCGAGAGATGGTATCAAGTTTGGAAAATGAAGCAGAGTTGCTAGCAATGTCAAATTCAGACATTAACAACAACAACGAAAACAGTGACATGCTTCCAAGGATATATAGTAATTCTAGCTTTGGTGATGTCTATTCTGAAACCACAACTCTTGGTGCTTCTTCTCTTGTTCAGATATGGGAGAAGAGGCTCAACAAATCCAATAGATCCAAACCAAACACACAAATTTCTACCAATGCATCATTGGAAGAACTAAACAGAGGAGGTTCAGAGGCAGGGGAATCCTCTAATTCTTCAGATGATCGCGAACCACCGGGGAGTGAAGAACCGTTCCCCGAATGGGAATCTTATAAAATTTCACAGAGTAATCAATCTTCACCACAACCAAGTTTTTATTCATTGGAGTCAGCAGAAAGTGACAGGGTCAGTGTTGCAGATATAATCAAAAGGCTAACTTCTACAAAGCAAGGACAGAGTCCATCATATTCAATTGGTGAAGAAAATGGCAATGAAGGGTGGAGTACCTGTGTAACATTTTCTCCTTGTATAGGGCGTGAACGCAGTTCCTCGCCAGAGCTTCCAGAGAACAAAGCTTTTCTCCCTCAGATTACTTGTTTGCCAAGAATTAGAGGTCGCCAAGCTTTTCATGATTTGCTTCAGCATTTGGTGCGTGACCGGTATGGGGAGCTCAACAATCTAGCAGCACGTGGAGCAGTTTCAAAGTTCACACAAAGAGGACGTATTCAGTCAGTGCTTCGGCTTAGGTTGTTGCAACGCGGGGTAGCGGCTAGTAATCAATCACACCAGAAATCAACAGCATCTGAAGTGAATATAAAACCACAAGGATCTGCTATTATGCAACTAAGGGAAAGATTTAACAGCGGGGTTGATAATAGAAAAACAATGCGGATAGAAGTAGCTGAACCAAGAAGTCCTCCTATACAATTTGATGCCTCTACCACAACTAATGAACTGAGCAAAGACACATGTAGTCTTATTATTAATAACACTACCAATCACTCTCCAGAATCCACACAAATATCAGTGTCTCAAACTAGTGTAGATGATCATAATAACGAAGAAGCTCGAACATGTTCAGACACAACATTACAAGAAACATGTCTTGAGGCTCAGCATATTGACTCAAAAGAAACTGCTGAGGCAATTCCAACTGTGACTGAGTCAAATGTAAATACGATGGAAGATGAGGTAGAGATAAGCAACCAAGAGTATACTATGGCTGAAACCAGTTATGATGAGACATTAGACGAAGACGAAGACGAAGAGGCAAGTAACCAGCACTATGCTGAAAGCAGTTATGGTGAGATAGTAGAAGCTATCGAGGATATTTTTGATACGAACTACGATGAAAATAGTTACGACTGGATCAGCGAAATTTCTCGGCCTAGAAGCTACTGGGAAGAACGCAGACAAGAATGGTATAGAGAGATGCTTGACACCGAGTCTCACAATGAAGATATATGTAAGCTCCTTGAAAGAAGAACAGTGTCAACTTTCCTTTCTAGTGACTTCCGCAATAGAATGGATAGATTGATGGAGTCTCATAGAGGAACACAAATACATTTAGTCAGTAGACAAGATGAGGAGGAAGACAACCAAATGTTTGTCTCATTTTTACAAGAACGCCTGCGTCCAGCAAGCAGTCTACAGGAAGATGAAAGAGAGCGAGTGGAGGAGCAAGAGGAGGAGGAAGAGACGAGAAATGAGGAAGAAGAAGAGCCGGAGGAAGATATAGAGGAAGAGGAAGAGAAGGTAGAGGAGCATGAGGGGGAGAGGTTGATCAGTAATTCATATCATGAAGTTTGTGATTATCTTAATCAATCCTCATCCCCAATTCATTTAACAACATGGAATCACAAAGACAATGAAACTGGTGATGATTTTGATAGATTTGCATCGATATCCTCACCACCTTCTCAATCTCAGTCTTTCTGTGAGGAAAGTCGACGAAACTCTTCATCCACGAATCATCATTCAATTGAAATGGAACTCATACATGATATGAGAGGGCATATGGAGCAACTTTATCGGGAGATTTCCGAGCTAAGGAAATCAATGGAGACCTGCATGGTTATGCAAATGCAATTAAAACAGTGCAAGAACCAAGAGCTTCATATAGTTAAAAATGAAGAGAAGAAGTCACATAACATGGCTCCAAAAAAAGGCAACTGCTGTATTTGCTATGACATGAAAGTAGATGCACTTTTGTACAGGTGTGGGCACATGTGTACTTGCCTGAAGTGTGCAAATGAGTTACAATGGAATAGTGGAAAATGTCCAATATGTAGAGCTAAAATAGTCGATGTCGTTCGCGTGTATGTTGATTTTTAA 2769 0.4063 MENGNEFFTHTSDQGCFRKSRIRGKGRATKMASSQVKITSSSPFGCVLRDHNQVDGYRESTVFQLKMKNFIKDHLNMSTDSKASEKNNNSFKASQKNNIGSLRFMKSNDNSNKDKHESCFASLISPRHSRLLDRWVARQAREMVSSLENEAELLAMSNSDINNNNENSDMLPRIYSNSSFGDVYSETTTLGASSLVQIWEKRLNKSNRSKPNTQISTNASLEELNRGGSEAGESSNSSDDREPPGSEEPFPEWESYKISQSNQSSPQPSFYSLESAESDRVSVADIIKRLTSTKQGQSPSYSIGEENGNEGWSTCVTFSPCIGRERSSSPELPENKAFLPQITCLPRIRGRQAFHDLLQHLVRDRYGELNNLAARGAVSKFTQRGRIQSVLRLRLLQRGVAASNQSHQKSTASEVNIKPQGSAIMQLRERFNSGVDNRKTMRIEVAEPRSPPIQFDASTTTNELSKDTCSLIINNTTNHSPESTQISVSQTSVDDHNNEEARTCSDTTLQETCLEAQHIDSKETAEAIPTVTESNVNTMEDEVEISNQEYTMAETSYDETLDEDEDEEASNQHYAESSYGEIVEAIEDIFDTNYDENSYDWISEISRPRSYWEERRQEWYREMLDTESHNEDICKLLERRTVSTFLSSDFRNRMDRLMESHRGTQIHLVSRQDEEEDNQMFVSFLQERLRPASSLQEDERERVEEQEEEEETRNEEEEEPEEDIEEEEEKVEEHEGERLISNSYHEVCDYLNQSSSPIHLTTWNHKDNETGDDFDRFASISSPPSQSQSFCEESRRNSSSTNHHSIEMELIHDMRGHMEQLYREISELRKSMETCMVMQMQLKQCKNQELHIVKNEEKKSHNMAPKKGNCCICYDMKVDALLYRCGHMCTCLKCANELQWNSGKCPICRAKIVDVVRVYVDF* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0847 922 MobiDBLite consensus disorder prediction 206 252 - -
Lan19g0847 922 MobiDBLite consensus disorder prediction 556 570 - -
Lan19g0847 922 CDD mRING-HC-C3HC5_NEU1 869 909 - -
Lan19g0847 922 SMART ring_2 870 908 IPR001841 -
Lan19g0847 922 MobiDBLite consensus disorder prediction 476 494 - -
Lan19g0847 922 MobiDBLite consensus disorder prediction 206 234 - -
Lan19g0847 922 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 852 921 IPR013083 -
Lan19g0847 922 Coils Coil 811 831 - -
Lan19g0847 922 ProSiteProfiles Zinc finger RING-type profile. 870 909 IPR001841 -
Lan19g0847 922 MobiDBLite consensus disorder prediction 476 504 - -
Lan19g0847 922 MobiDBLite consensus disorder prediction 701 732 - -
Lan19g0847 922 MobiDBLite consensus disorder prediction 688 737 - -
Lan19g0847 922 PANTHER BNAC05G24000D PROTEIN 31 921 - -
Lan19g0847 922 MobiDBLite consensus disorder prediction 774 803 - -
Lan19g0847 922 MobiDBLite consensus disorder prediction 555 574 - -
Lan19g0847 922 MobiDBLite consensus disorder prediction 779 796 - -
Lan19g0847 922 Pfam Zinc finger, C3HC4 type (RING finger) 867 914 - -
Lan19g0847 922 PANTHER BNAC05G24000D PROTEIN 31 921 - -
Lan19g0847 922 SUPERFAMILY RING/U-box 869 914 - -
Lan19g0847 922 Coils Coil 137 157 - -
Lan19g0847 922 Coils Coil 693 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0847 Lan-Chr19 15298805 15303399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0847 870 918 C3H Transcription Factor Family AT3G06140 40.816 2.60e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0847 - - gmx:100796627 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0092 4 1291332 1296286 Lan19g0847 19 15298805 15303399 LSH