Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0841 ATGGCTTCTTCTTTTTCCCTTTATCAATCAACCCAATGCTTCTTCTCCAATACCCAGTTCAAAGGTTTCCGCCATGGTTTTTCATGGCGACCCACTTATCCATTTGATTCTCGTGTTGAAAACAAAGTTCGACCCATCAAAGCTTCTGTTGTTGTATCTTCTTTTCCATTGTTTCAGACCCCCAAAGTTGAAGAGTCATCTTCTGATGTGTTGGAGCCTGCAGATCCTGATTTTTACAAGATAGGTTATGTCCGAAGTGTGCGAGCTTATGGAATTGATTTTAAGGAAGGGCCGGATGGATTTGGTGTGTATGCTTCCAAAGATGTAGAACCTCTTCGCCGAGCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACTATAAGCAAGAAGCTCCCGTGGATGTTTTTCCCTGATATAGTCCCAGTGGGTCATCCAATATTTGATATTATCAACTCGACAAATCCAGAGACAGATTGGGACCTAAGGTTAGCGTCCCTCCTCTTATTTTCATTTGACTGCGAAGGCAACTTTTGGCAGTTGTATGGTGACTTTCTACCCAGTTCAGAAGAGTGCTGTAGCTTACTTATGGCTACAAAGGAGGAACTTTTGGAGTTGCAAGATCCCGATCTTGCTTCTACAATAACAAACCAACAACAACGAGCCTTAGAATTCTGGGAGAAGAATTGGCATAGTGGTGCACCTCTTAAAATAAAGCGTCTCGCTCGCGATCCTCAAAGGTTCATTTGGGCAATGGCTATTGCACAATCGCGATGTATTAACATGCACATGAGAATTGGTGCTCTAAATCAAGAAGCAAATATGCTGATTCCTTATGCTGACATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACCGGATGCTTGAAGTTCTTATAAATGCTGGACAGCAGATTAAAAAGGGAGATGAGATGACAGTTAATTACATGAGCAGAGAGACCAATGATGTGTTAATGCAAAGATATGGATTTTCATCTCCTGTGAATCCTTGGGATGTGATCAAGTTCTCAGGCAATACACATATTCATTTGGACTCCTTCTTGTCAGTCTTCAATATATCTGGCCTTCCTGAAGAATATTACCATAACAATCGTCTATCAAACGCTGGAGATACTTTTGTTGATGGAGCAGTCCTTGCGGCAGCACGAACATTGCCGACTTGGTCAGATGGGGATGTACCCCCAATCCCTAGTGTGGAAAGAAAGGCTGCGAAGGAGTTACAAGACGAATGCCAACGTATGCTTTCAGCATATGCTACAACCGCTAAGCAAGACCAGAAATTGCTAGATTCCATGCCAGAAGCTACAAGGACACTTGAAGCTGCAATAAAGTATAGATTGCACAGGAAATTGTTCATTGATAAAGTTATCCAAACACTGGAGATTTATCAAGAGAAAATACTGTTCTAA 1452 0.4146 MASSFSLYQSTQCFFSNTQFKGFRHGFSWRPTYPFDSRVENKVRPIKASVVVSSFPLFQTPKVEESSSDVLEPADPDFYKIGYVRSVRAYGIDFKEGPDGFGVYASKDVEPLRRARVIMEIPLELMLTISKKLPWMFFPDIVPVGHPIFDIINSTNPETDWDLRLASLLLFSFDCEGNFWQLYGDFLPSSEECCSLLMATKEELLELQDPDLASTITNQQQRALEFWEKNWHSGAPLKIKRLARDPQRFIWAMAIAQSRCINMHMRIGALNQEANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQQIKKGDEMTVNYMSRETNDVLMQRYGFSSPVNPWDVIKFSGNTHIHLDSFLSVFNISGLPEEYYHNNRLSNAGDTFVDGAVLAAARTLPTWSDGDVPPIPSVERKAAKELQDECQRMLSAYATTAKQDQKLLDSMPEATRTLEAAIKYRLHRKLFIDKVIQTLEIYQEKILF* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0841 483 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 51 476 - -
Lan19g0841 483 ProSiteProfiles SET domain profile. 79 324 IPR001214 GO:0005515
Lan19g0841 483 Gene3D - 355 481 IPR036464 -
Lan19g0841 483 SUPERFAMILY SET domain 99 339 IPR046341 -
Lan19g0841 483 Gene3D set domain protein methyltransferase, domain 1 84 338 - -
Lan19g0841 483 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 335 476 IPR036464 -
Lan19g0841 483 CDD SET_LSMT 91 338 - -
Lan19g0841 483 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 51 476 - -
Lan19g0841 483 Pfam SET domain 100 323 IPR001214 GO:0005515
Lan19g0841 483 Pfam Rubisco LSMT substrate-binding 413 464 IPR015353 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lan19g0841 SET 6.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0841 - - gmx:100790985 840.106