Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0830 ATGGTGAAGTTTCTGAAGCCAAACAAGGCCGTTATCTTGCTTCAAGGCCGTTACGCCGGCAAGAAAGCCGTCATCGTTCGCACCTTCGACGACGGCACTCGCGACCGTCCATACGGCCACTGCCTCGTCGCCGGAATCAAGAAATACCCGTCGAAGGTTATCAAGAAGGATTCCGCAAAGAAGACGGCGAAGAAGTCGCGCGTGAAGGCGTTCGTGAAGCTCGTGAACTACCAGCACCTCATGCCCACGCGCTACACGCTCGACGTGGATCTCAAAGACGCGGTTAACGGTGATGTGCTTAGCGCTAAGGATAAGAAGGTAACTGCTCTGAAAGAGACGAAGAAGCGGTTGGAGGAGAGGTTCAAGACCGGGAAGAATAGGTGGTTTTTTACGAAGCTCAGGTTTTGA 408 0.5319 MVKFLKPNKAVILLQGRYAGKKAVIVRTFDDGTRDRPYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVNGDVLSAKDKKVTALKETKKRLEERFKTGKNRWFFTKLRF* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0830 135 Pfam Ribosomal L27e protein family 52 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Lan19g0830 135 PANTHER 60S RIBOSOMAL PROTEIN L27 1 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Lan19g0830 135 ProSitePatterns Ribosomal protein L27e signature. 124 135 IPR018262 GO:0003735|GO:0005840|GO:0006412
Lan19g0830 135 CDD KOW_RPL27 6 88 IPR041991 -
Lan19g0830 135 PANTHER 60S RIBOSOMAL PROTEIN L27 1 135 - -
Lan19g0830 135 Gene3D - 1 135 IPR038655 -
Lan19g0830 135 Coils Coil 100 127 - -
Lan19g0830 135 SUPERFAMILY Translation proteins SH3-like domain 2 135 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0830 Lan-Chr19 14810261 14810930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0830 1 135 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 84.444 9.82e-82 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0830 K02901 - gmx:100799485 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0104 4 1518209 1518866 Lan19g0830 19 14810261 14810930 LSH