Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0821 ATGGAGATGGGTTCTTCAGCAAAGAGAGAAGAACAAATTATTCAAAATTCAACAATGAAACGAACTTCATCTAACCCTTCTCACTCTATGAGCAAAGCAATCGCTCAATACACCGAAGATGCTCGCCTCCACGCTGTTTTTGAACAATCCGGCGACTCCTTCAACTACTCTCACTCCACCCGCCTCACTACCACCACCGCTACCACCCACTTCGACGATTCCCTCCCTGAACAACAGATCACTGCCTACCTCCTCAAGATTCAGCGTGGCGGTACAATTCAGCCCTTTGGGTGCATGATCGCGGTTGATCAACCTTCCTTCCGTGTAATTGGTTATTCTGATAATGCCCGTGACATGCTTGGTATAACTCCTCAATCAGTTCCTAGCCTTGAGAGTCCTGAGATTTTGAGTGTTGGGACTGATGTTCGAACCCTTTTCACTCACTCTAGTGCGGCTTTGTTAGAGAAGGCTTTTGGGGCGCGTGAGATCACGCTCCTCAACCCGATTTGGGTTCATTCTAGAAGCTCTGGTAAGGCGTTTTATGGTATATTGCATCGGATTGATGTTGGTGTTGTTATTGATTTGGAGCCTGCTAGGATTGAAGACCCTGCACTTTCCATTGTTGGGGCAGTGCAGAGTCAGAAGCTCGCGGTCCGTGCTATTTCGTTGTTGCAATCACTCCCTGGGGGTGATGTTAAGCTTCTTTGTGATACTGTGGTTGAGAGTGTTAGGGAGTTAACCGGGTATGATAGGGTTATGGTTTATAAGTTTCATGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGGCTGATTTGGAGCCTTATATTGGTTTGCATTACCCCGCTACCGATATACCGCAGGCTTCGCGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTCATGCTTCTCCTGTGAGGGTGGTGCAGGATGAGGCTCTTGCGCAACCTCTGTGTTTAGTTGGATCCACACTTCGTGCACCTCACGGTTGTCATGCTCAGTATATGGCTAATATGGGCTCCATTGCTTCGTTGGCGATGGCAGTTATAATCAATGGGAACGATGAAGAAGGTGTTGCTGGTCGTAGCTCAATGAGGCTTTGGGGATTGGTTGTTTGCCATCATACATCTGCTAGATGTATTCCTTTTCCTTTACGGTATGCTTGTGAGTTCCTGATGCAGGCCTTTGGGTTGCAATTAAATATGGAACTTCAATTGGCAGCACAGTCATTGGAGAAACGAGTTTTGAGGACGCAGACTCTCTTGTGTGACATGCTTCTCAGGGACTCTCCCACTGGCATTGTTACTCAGAGTCCTAGTATTATGGACTTGGTGAAGTGTAATGGGGCAGCTCTCTATTACCAAAGAAATTATTATCCCTTAGGTGTTACCCCAACTGAGTCTCAGATAAAGGACATCATAGAGTGGTTGTTGGCCTTCCATGGAGATTCGACGGGTTTAAGCACTGATAGTCTGGCAGATGCTGGGTACCCTGGTGCTGCCTTGCTTGGGGACACGGTTTGTGGTATGGCGGTTGCTTATATCACAGAAAAGGATTTTCTTTTCTGGTTCAGATCCCACACAGCAAAGGAGATCAAATGGGGTGGTGCGAAGCATCACCCAGAGGATAAGGATGATGGGCAGAGAATGGATCCCCGTTCTTCATTTAAGGCATTTTTGGAAGTGGTAAAAAGTCGCAGTTTGCCATGGGAGAATGCAGAAATGGATGCAATTCACTCGTTGCAGCTTATTCTGCGAGACTCTTTTAGAGATGCCGAGCATAGCAATTCTAAGGCTGTTGTACATGCCAATTTGTCAGATACAGAGTTGCAAGGGGTGGATGAACTGAGTTCCGTGGCAAGAGAAATGGTTAGATTGATAGAAACTGCCACTGCTCCCATATTTGCCGTTGATGTTGATGGCCGTATAAATGGGTGGAATGCAAAGGTTTCAGAATTGACAGGACTCCCAGTTGATGAGGCTATGGGGAAGTCCCTTGTACATGATCTAGTGTATAAGGAGTATGAAGAAACTGTAGACAAGCTTCTTTCTCATGCTTTAAGAGGTGAAGAAGATAAGAATGTTGAGATAAAGATGAAGATGTTTGGCTCGGAAAATCAAGATAAGGCAGTTTTTGTGGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTATGCTTTGTTGGTCAGGATGTTACAGGTCAAAAAATTGTAATGGACAAGTTCGTTAACATACAAGGTGACTACAAGGCTATTATACATAGCCCAAATCCGTTAATCCCTCCCATTTTTGCATCCGACGATAACACATGTTGCTTAGAGTGGAACACTGCCATGGAAAAGCTTACTGGTTGGGGCCGTGCTGATGTCATTGGAAAAATGCTTGTAGGAGAGGTTTTTGGTAGTTGCTGCCCATTGAAGGGTTCAGATGCTATGACAAAGTTCATGATTGTCTTGCACAATGCTCTTGGTGGACAAGATACTGATAAATTCCCTTTTTCATTTCTCGACCGGCATGGAAAATATGTGCAAGCTTTCTTGACTGCAAATAAGAGGGTTAACATGGATAGTCAGGTCATTGGGGCTTTTTGCTTTATGCAAATTGTGAGTCCTGAACTTCAACATGCTCTGAAAGTCCAGAAACAACAGGAGAAGAATTGCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAGAATCCTTTGAGTGGCATATGCTTTACAAACTCTCTTTTGGAGGCCACAGGCTTGACTGATGAACAAAAGCAGCTTCTTGAGACGAGTGCTGCTTGTGAGAAGCAAATGTTAAAGATAATACGGGATGTTGATCTGGACACTATCGAGGATGGGTCCTTGGAGCTTGAAAAGGGGGAGTTCTTGCTTGGGAATGTCATAAATGCAGTTGTTAGCCAAGTAATGTTATTGCTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCCGAAGAAATCAAAACATTGGCTCTTTATGGTGATCAATTGAGGATTCAACAAGTCTTAGCTGATTTTTTATTGAATATGGTGCGCTACGCTCCATCTCCAGATGGCTGGGTAGAGATTCATGTATGTCCAAGAATAAAACAAATTTCTGATGGGCTGACTCTTCTCAACGCCGAATTTAGGATGGTATGTCCTGGTGAAGGTCTTCCTCCTGAACTGATCCAAGATATGTTCCACGGCAGTCGGTGGGTGACTCAAGAAGGGTTAGGGCTGAGCATGAGCAGAAAGATTTTAAAGTTAATGAACGGTGAAGTCCAATACATCAGGGAGGCAGAAAGGTGCTACTTCTTGATTCTTCTTGAATTACCGGTGACGCGGCGAGGCTCTACGAGTACTAATTAG 3402 0.4439 MEMGSSAKREEQIIQNSTMKRTSSNPSHSMSKAIAQYTEDARLHAVFEQSGDSFNYSHSTRLTTTTATTHFDDSLPEQQITAYLLKIQRGGTIQPFGCMIAVDQPSFRVIGYSDNARDMLGITPQSVPSLESPEILSVGTDVRTLFTHSSAALLEKAFGAREITLLNPIWVHSRSSGKAFYGILHRIDVGVVIDLEPARIEDPALSIVGAVQSQKLAVRAISLLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRADLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVVQDEALAQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEEGVAGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCNGAALYYQRNYYPLGVTPTESQIKDIIEWLLAFHGDSTGLSTDSLADAGYPGAALLGDTVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMDPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAEHSNSKAVVHANLSDTELQGVDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVSELTGLPVDEAMGKSLVHDLVYKEYEETVDKLLSHALRGEEDKNVEIKMKMFGSENQDKAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKIVMDKFVNIQGDYKAIIHSPNPLIPPIFASDDNTCCLEWNTAMEKLTGWGRADVIGKMLVGEVFGSCCPLKGSDAMTKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQAFLTANKRVNMDSQVIGAFCFMQIVSPELQHALKVQKQQEKNCFARMKELAYICQEVKNPLSGICFTNSLLEATGLTDEQKQLLETSAACEKQMLKIIRDVDLDTIEDGSLELEKGEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLALYGDQLRIQQVLADFLLNMVRYAPSPDGWVEIHVCPRIKQISDGLTLLNAEFRMVCPGEGLPPELIQDMFHGSRWVTQEGLGLSMSRKILKLMNGEVQYIREAERCYFLILLELPVTRRGSTSTN* 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0821 1133 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 974 1120 IPR036890 -
Lan19g0821 1133 SUPERFAMILY GAF domain-like 211 406 - -
Lan19g0821 1133 SMART pas_2 757 827 IPR000014 -
Lan19g0821 1133 SMART pas_2 626 693 IPR000014 -
Lan19g0821 1133 SMART HKATPase_4 1011 1124 IPR003594 -
Lan19g0821 1133 PRINTS Phytochrome signature 146 168 IPR001294 GO:0006355|GO:0009584
Lan19g0821 1133 PRINTS Phytochrome signature 246 265 IPR001294 GO:0006355|GO:0009584
Lan19g0821 1133 PRINTS Phytochrome signature 331 352 IPR001294 GO:0006355|GO:0009584
Lan19g0821 1133 PRINTS Phytochrome signature 439 459 IPR001294 GO:0006355|GO:0009584
Lan19g0821 1133 PRINTS Phytochrome signature 524 543 IPR001294 GO:0006355|GO:0009584
Lan19g0821 1133 PRINTS Phytochrome signature 557 575 IPR001294 GO:0006355|GO:0009584
Lan19g0821 1133 PRINTS Phytochrome signature 627 643 IPR001294 GO:0006355|GO:0009584
Lan19g0821 1133 PRINTS Phytochrome signature 646 661 IPR001294 GO:0006355|GO:0009584
Lan19g0821 1133 PRINTS Phytochrome signature 720 737 IPR001294 GO:0006355|GO:0009584
Lan19g0821 1133 PRINTS Phytochrome signature 740 760 IPR001294 GO:0006355|GO:0009584
Lan19g0821 1133 PANTHER TWO-COMPONENT HISTIDINE KINASE 8 1127 - -
Lan19g0821 1133 ProSiteProfiles PAS repeat profile. 624 695 IPR000014 -
Lan19g0821 1133 PIRSF Phytochrome_conventional 10 1131 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lan19g0821 1133 CDD PAS 635 742 IPR000014 -
Lan19g0821 1133 Pfam Phytochrome region 422 595 IPR013515 GO:0006355|GO:0009584
Lan19g0821 1133 Gene3D - 414 587 IPR043150 -
Lan19g0821 1133 PANTHER PHYTOCHROME 8 1127 - -
Lan19g0821 1133 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 198 IPR035965 -
Lan19g0821 1133 SUPERFAMILY PYP-like sensor domain (PAS domain) 772 875 IPR035965 -
Lan19g0821 1133 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 231 399 IPR016132 -
Lan19g0821 1133 TIGRFAM sensory_box: PAS domain S-box protein 631 746 IPR000014 -
Lan19g0821 1133 MobiDBLite consensus disorder prediction 9 30 - -
Lan19g0821 1133 Pfam PAS fold 627 742 IPR013767 GO:0006355
Lan19g0821 1133 Pfam PAS fold 758 878 IPR013767 GO:0006355
Lan19g0821 1133 CDD HisKA 899 955 IPR003661 GO:0000155|GO:0007165
Lan19g0821 1133 Pfam PAS fold 82 198 IPR013654 GO:0006355
Lan19g0821 1133 SUPERFAMILY GAF domain-like 417 594 - -
Lan19g0821 1133 Gene3D PAS domain 771 881 - -
Lan19g0821 1133 MobiDBLite consensus disorder prediction 1 30 - -
Lan19g0821 1133 SUPERFAMILY PYP-like sensor domain (PAS domain) 631 739 IPR035965 -
Lan19g0821 1133 ProSiteProfiles Histidine kinase domain profile. 906 1126 IPR005467 -
Lan19g0821 1133 CDD PAS 769 877 IPR000014 -
Lan19g0821 1133 Gene3D - 962 1127 IPR036890 -
Lan19g0821 1133 ProSiteProfiles PAS repeat profile. 758 810 IPR000014 -
Lan19g0821 1133 Gene3D - 212 570 IPR029016 -
Lan19g0821 1133 CDD HATPase_Phy-like 1010 1122 IPR044767 -
Lan19g0821 1133 Gene3D PAS domain 618 752 - -
Lan19g0821 1133 Pfam His Kinase A (phospho-acceptor) domain 903 963 IPR003661 GO:0000155|GO:0007165
Lan19g0821 1133 SMART gaf_1 231 419 IPR003018 GO:0005515
Lan19g0821 1133 ProSitePatterns Phytochrome chromophore attachment site signature. 331 340 IPR013516 -
Lan19g0821 1133 SMART HisKA_10 899 963 IPR003661 GO:0000155|GO:0007165
Lan19g0821 1133 Gene3D PAS domain 86 334 - -
Lan19g0821 1133 Pfam GAF domain 232 409 IPR003018 GO:0005515
Lan19g0821 1133 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1011 1117 IPR003594 -
Lan19g0821 1133 Gene3D - 882 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0821 Lan-Chr19 14695289 14700162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0821 5 1124 Histidine Kinase Gene Family AT4G16250 73.462 0.0 1747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0821 K12121 - gmx:100799831 1965.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0821 19 14695289 14700162 Lan16g0218 16 1716826 1723208 LSH