Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0820 ATGGGAAATCCAGAAGTTGTAGAAGAAAGAGAGATTCTTCTGAAGAAGATTAAAGACCTTGAAGCTGTTCAAGTTGACCTGAAACAAGAGATGTCAAAACTCAAGCTTTCATCATCATTTAAGGATCTTCATCAACAACAACAACAACACCATCATCATCATAGGCATAGGTCTCATTCACTTTCACCACAACGTTCAAGGTTGAGAAAGGAAGCACCACCACCAGTTGCATCTAATAAAGCTTCATCATCATCTTCTTCTTCTTCCCCTTTGCAGAGGGAAAGTAAGAGTGATGAGCTTCAACACCATGGTTCTGTGAACCTCACTGATAGGGAGTGTCTCAATATATTGCAGTCAATGGGTCATTCTCTTCATATATTGGATCTTCAATGCCGAATCATATACTGGAACCCCAGTGCTGAAAATCTGTATGGTTATGTAGCAGCAGAAGTTCTTGGCAGGGATGGGATTGAGCTGCTTATAGATCCCAAGGATTTTGGTTTAGCTAGTGATGTATTCAATCGTGTCACGATGGGAGAGAGCTGGACTGGCCAGTTCCTTTTGAAGAATAAGATTGGGGACAAGTTTTTAGCCGCGGCAACCAATACACCTTTCTACGACGACGGTGGAAACTTGGTTGGGATTATTTGTGTCTCCAGTGATTCAAAACCCTTTATTGCAATGAAAGTTCCATTTTCAGGTGTAAAAAATGCTGAACTAGATTCAGGTTCCACCCATCCTAGAATTAGCATTACAAGTAAACTTGGACTTGACTCTCAGCAGCCACTTCAAGTTGCTCTAGCATCAAAAATTTCAAATTTGGCATCAAAGGTGAGTAACAAGGTTAAGTCAAGAATCTGGACAGGAGAAGATAATCTCAATCGTGAAGGTGGGAGCGGAGAAAGTCATCATTCTGAGCACATTTTCTCAGACTCTGCTCTTTCTGATCAGAGAGAAGATGCCAATTCCAGTGGAGCTAGCACTCCTAGAGGAGATCTGCAACCATCTCCTTTTGCTGTATTTTCTCATGTTGACGAGAAATGCCAAGGGAATTCTCTGAGAGACTCTGGCAATGAGAATGAAGGAAAACCTATTCACAAGATCATGGCTTCTAAGGCTGAAGCATGGATTCAAAAGAGAACATTATCATGGCCATGGAGAGCAAATGGTCGGGAAGGATCTGAGCCAAGGAATGTTCATGTTGCTTGGCCTTGGTTGCCGAGTGATCAAGAAAATGAGTCAGTTAATCATAAGAATGTTTCTTATGGGTTGAAGCTTGAGACCCAGGCAGTTGAAAGTAATCAACATGTTAATAATGAGGCTTCAGGATCCTGGTCATCCTTTAATGTTAACAGCTCAAGTAGTATCAGCAGCTGTGGAAGTAGCAGCAGTTGTCCTACCAATAACAAAATGGATGCCAACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGACTTGACGATTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTTTATCATGCTCTGTGGTATGGATCGGATGTTGCCGTCAAGATTTTCTCAAAGCAATATTCAGATGATGTGATAATGTCCTTCAGACAAGAGGTATCTGTCTTGAAAAGACTTCGTCATCCAAATATTCTCCTCTTTATGGGGGCAGTGACTTCACCTCAACATCTATGCATCGTGACAGAGTTTTTCCCACGTGGAAGCTTGTTTCGTATGCTTCAGAGAAACGCAGCCAAACTTGACTGGAGACGGCGAGTTCAAATGGCGTTAGATATAGCGAGAGGTGTAAATTATCTTCATCATTACAACCCCCCTATCATTCATCGAGATCTGAAGTCTTCAAATATTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCTCGTCTTAAGTATGAAACATTTCTCACAACTAAGACCGGAAGGGGCACGCCCCAGTGGATGGCACCAGAAGTTCTTCGAAATGAACCCTCGGATGAAAAGTCTGACGTTTACAGCTTTGGGGTGATATTGTGGGAACTTGCGACTAAAAAGATCCCTTGGGATACTCTAAACATAACACAGGTTACTGGAGCTGTAGGGTTTATGAACCATCGGCTAGAAATTCCAGAAGATGTTGAGCCACAGTGGGCTTGTATAATTAAGAGCTGCTGGCATAGTGATTCAGCTTGTCGGCCAACATTCGAGGAACTTTTAGAAAGGCTTAAAGAGCTGCAGAAACAGTTTGCTGTTAAGTTTCAGGCAGCATCCCGGTCGAATGGCCGGGAAAGGACTCAAAAGGAGTCCTAG 2298 0.4243 MGNPEVVEEREILLKKIKDLEAVQVDLKQEMSKLKLSSSFKDLHQQQQQHHHHHRHRSHSLSPQRSRLRKEAPPPVASNKASSSSSSSSPLQRESKSDELQHHGSVNLTDRECLNILQSMGHSLHILDLQCRIIYWNPSAENLYGYVAAEVLGRDGIELLIDPKDFGLASDVFNRVTMGESWTGQFLLKNKIGDKFLAAATNTPFYDDGGNLVGIICVSSDSKPFIAMKVPFSGVKNAELDSGSTHPRISITSKLGLDSQQPLQVALASKISNLASKVSNKVKSRIWTGEDNLNREGGSGESHHSEHIFSDSALSDQREDANSSGASTPRGDLQPSPFAVFSHVDEKCQGNSLRDSGNENEGKPIHKIMASKAEAWIQKRTLSWPWRANGREGSEPRNVHVAWPWLPSDQENESVNHKNVSYGLKLETQAVESNQHVNNEASGSWSSFNVNSSSSISSCGSSSSCPTNNKMDANTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKIFSKQYSDDVIMSFRQEVSVLKRLRHPNILLFMGAVTSPQHLCIVTEFFPRGSLFRMLQRNAAKLDWRRRVQMALDIARGVNYLHHYNPPIIHRDLKSSNILVDKNWTVKVGDFGLSRLKYETFLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATKKIPWDTLNITQVTGAVGFMNHRLEIPEDVEPQWACIIKSCWHSDSACRPTFEELLERLKELQKQFAVKFQAASRSNGRERTQKES* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0820 765 SUPERFAMILY PYP-like sensor domain (PAS domain) 115 218 IPR035965 -
Lan19g0820 765 MobiDBLite consensus disorder prediction 296 314 - -
Lan19g0820 765 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 40 754 - -
Lan19g0820 765 MobiDBLite consensus disorder prediction 290 335 - -
Lan19g0820 765 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 40 754 - -
Lan19g0820 765 SMART serkin_6 487 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0820 765 SMART pas_2 111 178 IPR000014 -
Lan19g0820 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Lan19g0820 765 PRINTS Tyrosine kinase catalytic domain signature 560 573 IPR001245 GO:0004672|GO:0006468
Lan19g0820 765 PRINTS Tyrosine kinase catalytic domain signature 599 617 IPR001245 GO:0004672|GO:0006468
Lan19g0820 765 PRINTS Tyrosine kinase catalytic domain signature 646 656 IPR001245 GO:0004672|GO:0006468
Lan19g0820 765 PRINTS Tyrosine kinase catalytic domain signature 665 687 IPR001245 GO:0004672|GO:0006468
Lan19g0820 765 PRINTS Tyrosine kinase catalytic domain signature 709 731 IPR001245 GO:0004672|GO:0006468
Lan19g0820 765 Pfam Protein tyrosine and serine/threonine kinase 487 738 IPR001245 GO:0004672|GO:0006468
Lan19g0820 765 ProSiteProfiles Protein kinase domain profile. 487 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0820 765 Pfam PAS domain 126 221 IPR000014 -
Lan19g0820 765 MobiDBLite consensus disorder prediction 77 94 - -
Lan19g0820 765 MobiDBLite consensus disorder prediction 315 331 - -
Lan19g0820 765 Gene3D PAS domain 122 224 - -
Lan19g0820 765 MobiDBLite consensus disorder prediction 47 63 - -
Lan19g0820 765 SUPERFAMILY Protein kinase-like (PK-like) 464 738 IPR011009 -
Lan19g0820 765 CDD PAS 126 221 IPR000014 -
Lan19g0820 765 CDD STKc_MAP3K-like 493 731 - -
Lan19g0820 765 TIGRFAM sensory_box: PAS domain S-box protein 116 219 IPR000014 -
Lan19g0820 765 Coils Coil 10 37 - -
Lan19g0820 765 MobiDBLite consensus disorder prediction 38 104 - -
Lan19g0820 765 Gene3D Transferase(Phosphotransferase) domain 1 564 765 - -
Lan19g0820 765 ProSiteProfiles PAS repeat profile. 109 180 IPR000014 -
Lan19g0820 765 Gene3D Phosphorylase Kinase; domain 1 476 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0820 Lan-Chr19 14687919 14694650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0820 1 751 MAP Kinase Kinase Kinase AT3G06620 53.925 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lan19g0820 PK_Tyr_Ser-Thr 1.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0820 - - gmx:100800867 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1354 1 23241690 23245929 Lan19g0820 19 14687919 14694650 PCT
Lan19g0820 19 14687919 14694650 Lan1g1354 1 23241690 23245929 PCT