Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0803 ATGGCATCAGCAGAAGCAGCTTCTGATGGGGCTGGTCCGAGATATGCACCCGATGATCCTACTCTTCTACAGCCATGGAAGGGTTTGATCGATGGTAGCACCGGTGTGATGTACTACTGGAATCCTGAAACAAATGATACTCAATATGAAAGACCAGCTCCCTTGGCCCCACCTGTGCCTGCGGGACCTGCACCTGGGGCGTCTACGCCGAGCTTGGCGCCCATACCGGGTGCACACATGGTACAATCTGGTGGGGTGGTGGCACAGTATGGGCAAGTGCACTCCTCACAACAACAGCAGGGGAATCACTTCGGCCAACAGTATGGGCAACCGATGCTGCAGCAGCATCCTTCTCAGGCTGGTCAATCTGCACAGCATCAGAATTCTCAGCTGTCACACTCTGCAGCACAGCCGGGATATCAAGCTAGACCACATATGATGCATGCTCAAGGACAGCACGCGATGCAGTCTCAAGGGCAACAAATTATGCATCCTCAAGGACAGCAAATGCATTATCAGATGTCGTCGCCGCATTCCCAGCATCATGGGCAAGGACCACCTCAGGATCATAGCTTGCGTAACATGCAACCACAAGCACATCAATTCACTCCCCAGAACATGCAGTATATGTCATATCAGCAAAACATGATTCAATCCGGCCAGCCGAATTCCCAGTCGGTGCAGCCGAACATGAACACCTCTGGGCAACCTAACTCCCAGCACATTCAGAATCACAGCATGCATGGTCAGCCCCCTTTTGAAAGTCAGCAAGATTATAAAACAGCTTATCCGAAGACAGAGGAAACGGAGTTTAAAAATGGAAGCCAAACTGGAAATTCACCATCCCAGTATCAACAAAGAAGTGGGTTGCCTGTTCAAAACAACCAGAGTGTTCATGCTGATATCAGTTCTGATCAATTGCCAAACGTAGGTTTTAATGCTGGCCAGCCGCAACAGTTCAGGGGTTTATCAGGAAACGTGCATCAGTCTCCATCTGCAATGCAGTCGCCACTGGGTGGTTCTGATTTATTTTACCCACATGGTCCTCGTCCTAACTTTCGAAACCAGATGAGCCCCGGAATGATGCATGGTCATCCATCCAATGTCCATCCTGCTGGACAAAAAATGGGACACGAGGAAAATTTACGCGGTCGATCTGGGAATGAATATCACTATAATTCTAGCAAGGAGATGCCAACAACGGGTCATCATCAGCCAGATATGGCACAAATACCCATTTCAGGAAACCGGAAGGATGTAATGCCTGGGGGAAGTGGAATTTCCAGGAATTCTATGCAAAACACGTTCACTCCTCCAATGGGACCTCCATCTTTTTCAAGTAATGCTCCGATAAGGCCTCCTTATATTGGATCTTCAGATGTCTCGGGTCTCTCACAAGCTGAACTTTACTGCCAGCAACATGAAATTACAGCAACAGGAGACAACATTCCACCCCCTTTTATGTCATTTGATGCTGCTGGGTTTCCGCCAGAGTTATTGAGGGAGATATATTCTGCTGGCTTCTCCAATCCAACGCCAATTCAGGCTCAAACGTGGCCTGTTGCACTACAGGGTAGAGACATAGTGGCAATTGCCAAAACAGGCTCTGGGAAAACATTGGGCTATGTAATTCCTGCCTTCCTTCTTCTTAAACAGCGACATAATAACGCCCTAAATGGCCCTACTGTTTTGGTTTTGGCTCCAACACGTGAACTGGCAACACAGATCCAAGATGAGATCCTTAAATTTTGTCGTTCTTCACGGGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCTCTCCAGCTAAAAGAATTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGCCTCAATGATATACTTGAAATGAAGAAAATTGACTTCGGGCAAGTTTCACTCTTTGTGCTTGATGAGGCTGACCGGATGCTTGATATGGGTTTTGAACCTCAAATTCGTAAGATTGTGAATGAGATTCCTCCACGCAGACAAACTCTCATGTATACAGCAACCTGGCCAAAAGAAGTAAGGAAAATTGCCAATGATTTGCTTGTTAGTCCTGTCCAGATTAACATCGGAAGTGTAAATGAGCTTGCTGCGAATAAATCTATCACTCAGTATGTTGAAGTTGTATCACAAATGGAGAAACAGAGGCGTTTGGAGGAGATCCTCAGTCAGCAAGAACAAGGTTCTAAGATTATAATATTTTGTTCCACAAAGAGGTTATGTGATCAGCTTGCCCGTGGTATTGGCCGTAGTTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGATTATGTTTTAAATCAATTCCGGTCTGGGAAGTCACCAATTTTGGTTGCCACTGATGTTGCTGCTCGTGGGCTTGACATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCCACTGGAGTTGAGGACTATGTACACCGTATCGGAAGAACTGGAAGGGCAGGTGCTACTGGAGTGGCATATACCTTTTTCTCTGAGCAGGACTGGAAGCATGCAGGTGATTTAATCAAAGTTTTGGAGGGTGCTAACCAGCCTGTGCTTCCACAGTTGAGAGATATAGCTTTGCGTGGGCCGCCCAACTACGCAAAGGATCGGGGTGGAATGAATCGGTTTGACTCTGGTGGCCGTGTTGGTGGGCGCTGGGAGGCTGGTGGTCGTGGTGGCATGAGAGATGGTGGCTTTGGTGGTCGTGGTGGCATGAGAGATGCTGGCTTTGGTGATCGTGGCGGCAGGAGAGATGGCGGCTTTGGTGGTCGTGGAGGCATGAGAGATGATGGTTTTGGTGGTCGTGGCGGCATGGGTGATGGTGGGGGGTTTGGTGGTCCTCCTGGTGGCATGAAGGACGGTGGGTTTGGTGGTCCTCCTGGTGGCATGAGGGAAGGTGGTCGTGGTGGCATGAGGGATGGAGCTGGTGGGCGAGGTGGGAGAGGCGATTTCTTTTCTGGTAGGGGCAACAGAGGTCGGGGATTTGATGGCCCTCGTGGGGGTCATGTTGGTTGGGGTAGGGGTGAACAGGGTCCGAATGATCGTTACAGCATGGATGGGCGTGGACGAGGGCGTGGACGTGGACGATTTGACAATAGAAGAGACACTGGTTTCAGAAACAGAGGCGGAAGTACTAGTCGTAGTCCTGAAAGAGTTCGAACATGGGATGCTAGCAGCAGAAGCCGCAGTAGAAGTAAGAGCCGGGGTCGCAGCCGAAGCCGCAGCTGGTCTCATGATCGTAGTCGCAGCTACAGCCATAGCATTAGCCCACGTAAGAGCCGTAGCCGCAGCCATGGTCGTAGAAGTTACAGCCGCAGCCATAGCCGTGGCCGTAGAAGTTACAGCCGCAGCCATAGCCGTAGCCGTAGAAGTTACAGCCGCAGCCGCAGCCCGGCTGCCAATGTCAGGCGCAATAGGCCAAGTAAGTTCTCTGATATGGCACCAGAAGTAGGAGCTGCTGATCCTAGAATGGTGGGAGCTGAACATGTGGAGCAGGTACCTGTTGTTGGGAGTACCGGCCCAGATAATCCAGAGGCTGTAGTAGACCTTTCTCATTAA 3579 0.4982 MASAEAASDGAGPRYAPDDPTLLQPWKGLIDGSTGVMYYWNPETNDTQYERPAPLAPPVPAGPAPGASTPSLAPIPGAHMVQSGGVVAQYGQVHSSQQQQGNHFGQQYGQPMLQQHPSQAGQSAQHQNSQLSHSAAQPGYQARPHMMHAQGQHAMQSQGQQIMHPQGQQMHYQMSSPHSQHHGQGPPQDHSLRNMQPQAHQFTPQNMQYMSYQQNMIQSGQPNSQSVQPNMNTSGQPNSQHIQNHSMHGQPPFESQQDYKTAYPKTEETEFKNGSQTGNSPSQYQQRSGLPVQNNQSVHADISSDQLPNVGFNAGQPQQFRGLSGNVHQSPSAMQSPLGGSDLFYPHGPRPNFRNQMSPGMMHGHPSNVHPAGQKMGHEENLRGRSGNEYHYNSSKEMPTTGHHQPDMAQIPISGNRKDVMPGGSGISRNSMQNTFTPPMGPPSFSSNAPIRPPYIGSSDVSGLSQAELYCQQHEITATGDNIPPPFMSFDAAGFPPELLREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYVIPAFLLLKQRHNNALNGPTVLVLAPTRELATQIQDEILKFCRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLFVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIANDLLVSPVQINIGSVNELAANKSITQYVEVVSQMEKQRRLEEILSQQEQGSKIIIFCSTKRLCDQLARGIGRSFGAAAIHGDKSQGERDYVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFSEQDWKHAGDLIKVLEGANQPVLPQLRDIALRGPPNYAKDRGGMNRFDSGGRVGGRWEAGGRGGMRDGGFGGRGGMRDAGFGDRGGRRDGGFGGRGGMRDDGFGGRGGMGDGGGFGGPPGGMKDGGFGGPPGGMREGGRGGMRDGAGGRGGRGDFFSGRGNRGRGFDGPRGGHVGWGRGEQGPNDRYSMDGRGRGRGRGRFDNRRDTGFRNRGGSTSRSPERVRTWDASSRSRSRSKSRGRSRSRSWSHDRSRSYSHSISPRKSRSRSHGRRSYSRSHSRGRRSYSRSHSRSRRSYSRSRSPAANVRRNRPSKFSDMAPEVGAADPRMVGAEHVEQVPVVGSTGPDNPEAVVDLSH* 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0803 1192 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 293 963 - -
Lan19g0803 1192 SMART ultradead3 507 710 IPR014001 -
Lan19g0803 1192 MobiDBLite consensus disorder prediction 268 293 - -
Lan19g0803 1192 MobiDBLite consensus disorder prediction 1021 1047 - -
Lan19g0803 1192 Pfam Helicase conserved C-terminal domain 719 827 IPR001650 -
Lan19g0803 1192 CDD SF2_C_DEAD 707 836 - -
Lan19g0803 1192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 559 842 IPR027417 -
Lan19g0803 1192 MobiDBLite consensus disorder prediction 1094 1132 - -
Lan19g0803 1192 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 293 963 - -
Lan19g0803 1192 MobiDBLite consensus disorder prediction 217 293 - -
Lan19g0803 1192 MobiDBLite consensus disorder prediction 369 416 - -
Lan19g0803 1192 MobiDBLite consensus disorder prediction 48 71 - -
Lan19g0803 1192 SMART ww_5 21 54 IPR001202 GO:0005515
Lan19g0803 1192 Gene3D - 698 868 IPR027417 -
Lan19g0803 1192 MobiDBLite consensus disorder prediction 92 137 - -
Lan19g0803 1192 MobiDBLite consensus disorder prediction 876 1192 - -
Lan19g0803 1192 MobiDBLite consensus disorder prediction 92 194 - -
Lan19g0803 1192 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Lan19g0803 1192 MobiDBLite consensus disorder prediction 387 401 - -
Lan19g0803 1192 MobiDBLite consensus disorder prediction 217 260 - -
Lan19g0803 1192 MobiDBLite consensus disorder prediction 916 931 - -
Lan19g0803 1192 MobiDBLite consensus disorder prediction 1079 1093 - -
Lan19g0803 1192 MobiDBLite consensus disorder prediction 151 194 - -
Lan19g0803 1192 MobiDBLite consensus disorder prediction 53 70 - -
Lan19g0803 1192 Pfam DEAD/DEAH box helicase 512 682 IPR011545 GO:0003676|GO:0005524
Lan19g0803 1192 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 488 516 IPR014014 GO:0003724
Lan19g0803 1192 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Lan19g0803 1192 MobiDBLite consensus disorder prediction 1 24 - -
Lan19g0803 1192 SMART helicmild6 743 827 IPR001650 -
Lan19g0803 1192 Gene3D - 463 697 IPR027417 -
Lan19g0803 1192 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Lan19g0803 1192 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 519 693 IPR014001 -
Lan19g0803 1192 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 722 866 IPR001650 -
Lan19g0803 1192 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 639 647 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0803 Lan-Chr19 14517555 14525406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0803 476 847 Eukaryotic Initiation Factors Gene Family AT3G19760 34.584 2.59e-63 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0803 K12823 - gmx:100807830 1253.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0803 19 14517555 14525406 Lan16g0237 16 1896946 1904136 LSH