Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0778 ATGACTTCTACTCATGACCTCACAGATAACGAAGCCGATGGCCAGCAGCAACCAGAATCACAGATGCAGTCTTTATCTTCAAATGGAATTTCTCAATTGGGTATTGGCACACAGGATGTTCAGTATGGAACACCTCCGCCGCTCGGAACTGGGCATGCAATGGGACCACCTGCTTATCCATATCCGGACCCGTACTACAGAAGTATCTTTGCTCCCTACGAGACACAACCTCATCCCCCAGGACCCCCACAAATCTATGGTGGACAGCCAATGGTCCATCTTCAGTTAATGGGAATGCAACAACCCGGTGTTCCTTTGCCAACTGATGCAGTTGAGGAGCCCGTGTTTGTCAATGCCAAACAGTATCATGGTATATTAAGGCGTAGGCAGTCCCGTGCTAAAGCTGAATCAGAAAATAAAGCTATAAGGAACCGGAAGCCATACCTGCATGAATCTCGGCATTTGCATGCACTGAGAAGAGCAAGAGGATGTGGAGGTCGGTTTCTGAATGCGAAGAAAGATGAGGATCAACAGAAGAAGGACTCATCAACTGAAAACTCGCTCACCAATGTCAGTCTCAATTCTGATAAAAATGATCTTGAGCCATCTGATAGAACATCCTAA 624 0.4663 MTSTHDLTDNEADGQQQPESQMQSLSSNGISQLGIGTQDVQYGTPPPLGTGHAMGPPAYPYPDPYYRSIFAPYETQPHPPGPPQIYGGQPMVHLQLMGMQQPGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHLHALRRARGCGGRFLNAKKDEDQQKKDSSTENSLTNVSLNSDKNDLEPSDRTS* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0778 207 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700|GO:0006355
Lan19g0778 207 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700|GO:0006355
Lan19g0778 207 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 2 185 - -
Lan19g0778 207 MobiDBLite consensus disorder prediction 183 197 - -
Lan19g0778 207 MobiDBLite consensus disorder prediction 1 56 - -
Lan19g0778 207 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 185 IPR001289 GO:0003700|GO:0006355
Lan19g0778 207 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677|GO:0016602
Lan19g0778 207 MobiDBLite consensus disorder prediction 163 207 - -
Lan19g0778 207 Gene3D - 111 172 - -
Lan19g0778 207 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700|GO:0006355
Lan19g0778 207 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700|GO:0006355
Lan19g0778 207 MobiDBLite consensus disorder prediction 1 39 - -
Lan19g0778 207 SMART cbf3 110 171 IPR001289 GO:0003700|GO:0006355
Lan19g0778 207 MobiDBLite consensus disorder prediction 167 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0778 Lan-Chr19 14188321 14193256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0778 2 207 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.212 1.74e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lan19g0778 CBFB_NFYA 8.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0778 K08064 - gmx:100809036 312.768