Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0750 ATGTTTCCAAGAATGATACACCCCATTGATGGGCTCGTTGAAGATGTTCAAGGTGGTTGTGGTGGTTCAAACCTCTCTCATAATCATAAGGGAGATCCATGTCTGGTTCTCACTGCTGATCCAAAACCTCGACTTCGTTGGACACAGGACCTTCATGAACGGTTCGTTGATGCTGTTACTCAGCTTGGAGGTGCTAGCAAAGCTACACCAAAAGCAATCTTGAGGACTATGAACGTCAAGGGTCTGACTCTATTTCATTTAAAGAGTCATCTTCAGAAATACAGGCTTGGCAAGCAATCAGGAAAAGATATCAGTGAGGCATGCAAAGATGGAATGTCAGGCTCTTATCTTTTAGAAAGCCCTGGTAATGATAACTCTCCTCCAAATTTGCCAGCTTCCGATACAAACGAGGGTTACGAAATCAAGGAGGCATTAAGAGCACAGATGGAAGTGCAAAGTAAACTACATTTGCAAGTGGAGGCAGAGAAGCACGTGCAAATTCGCCAGGATGCAGAGCGGAGATACATGGCCATGCTCGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATAGGTGCTACTGTTACAGACACAGATAGCCAAAAGTTTCAAGGAATTGGAAGTAAATCACCAAGAGGTCCCATGGTTGATGCTCTCGGCTTTTACTCCATGTCATCGGTTGAGGTGGTCGGAGTGCACCTCCCGGAAGAAGAAATACCACCAAGTCTCCCACCCCAACGGGGTGATTGTTCAACCGAAAGTTGCCTAACTTCACACGAGACTTCCGGAGGAATCGGTTTTGAAGGAACTCAAGGTGGTGGAAAAATAAGAATGTTGGGCATGGAGTCTATGGCAGCACCTTTGATATGGAGTGAAGCTAAGATGAGAACTCAAGCCATCAATGTATCACAAGGTAACCCTCATGGAATGAGTAGGTATGGCATGTAA 948 0.4536 MFPRMIHPIDGLVEDVQGGCGGSNLSHNHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAILRTMNVKGLTLFHLKSHLQKYRLGKQSGKDISEACKDGMSGSYLLESPGNDNSPPNLPASDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHVQIRQDAERRYMAMLERACKMLADQFIGATVTDTDSQKFQGIGSKSPRGPMVDALGFYSMSSVEVVGVHLPEEEIPPSLPPQRGDCSTESCLTSHETSGGIGFEGTQGGGKIRMLGMESMAAPLIWSEAKMRTQAINVSQGNPHGMSRYGM* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0750 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Lan19g0750 315 MobiDBLite consensus disorder prediction 115 135 - -
Lan19g0750 315 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Lan19g0750 315 MobiDBLite consensus disorder prediction 118 133 - -
Lan19g0750 315 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 315 - -
Lan19g0750 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
Lan19g0750 315 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
Lan19g0750 315 MobiDBLite consensus disorder prediction 247 265 - -
Lan19g0750 315 MobiDBLite consensus disorder prediction 238 271 - -
Lan19g0750 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 315 IPR044848 GO:0003700
Lan19g0750 315 Pfam MYB-CC type transfactor, LHEQLE motif 140 185 IPR025756 -
Lan19g0750 315 Gene3D - 41 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0750 Lan-Chr19 13913300 13918001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0750 8 258 G2-like Transcription Factor Family AT3G24120 44.487 3.79e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan19g0750 Myb_DNA-binding 3.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0750 - - lang:109329801 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0560 4 8039066 8043573 Lan19g0750 19 13913300 13918001 LSH
Lan19g0750 19 13913300 13918001 Lan16g0315 16 2545409 2548922 LSH