Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0738 ATGCTCAGCCATGGATTCGGTCAATCTGATCTCATTTGGAACTCTTTAGCATATCCGATGGACTCGAAAACTAGTTCTAGAGCTCACCCAAAGCATTGTCAGAAGACGGCTGGGATTGAAACCCTTGAGGCTAAAGATATCCGCCCTCCTTCACTGCCAGATTCAAAGGCAGGTGAACCCGAGGTCATTGCACGGGAAAGTATATTGAAGTCTGTGCAAAATTCATCAAGGCAGAATACAGTAGAAATTCCTGACATCAAGAAGTTAGGAATTTCAGCCGAAACAGGGTCTGCTTCCTCATCTGCCCTCGATAAAGAAGTAGATCCAGCTGTTAATGAGAACATAGACTCACAGGAAAGTGCTATTGATCAGGACAAAAAGAAATCAGGATATGGAAGTGTGAAGAACAGTTGTGTTTCCTCTAAAGTTAGCGACGGTGCCAGTGGCCTTGCAAAGACAAGTGGAAGTGCCAAGACCAGTGAACGTGCTGATTTTGTTGAGAGTGGTAAGAGCAGTATTTGTAGAGGAAGTACAAGCAGTGATGTGAGTGATGAGAGTACTTGTAGTAGCTTTAGTAGCAGCATAAACAAGCCTCACAAGGCAAATGACATGAGTTGGGAAGCTATCCAAGTTCTTCGAACAAGAGATGGAGTATTGGGTTTAAGTCACTTTAGACTGCTAAAGAGGTTGGGTTGTGGTGATATCGGCAGTGTATATCTCTCTGAGTTGAGCGGAACTAAATGTCACTTTGCGATGAAGGTGATGGACAAAGGGTCCCTAGCTAGTCGTAAAAAGCTCCTTCGTGCCCAGACAGAGAGAGAAATTCTGCAGTCACTTGACCACCCCTTTCTTCCTACTTTGTATACTCATTTTGAGACAGAGAAATTCTCATGCTTGGTAATGGAGTTCTGCCCTGGTGGAGACCTTCATACACTTCGGCAGAAGCAGCCAGGGAAGCATTTTCCCGAGCAGGCAGTGAAATTTTACGTGGCAGAGGTCCTACTCGCTATGGAGTACCTCCACATGCTTGGAATTGTCTACCGTGACCTGAAGCCCGAAAATGTCCTTGTTAGGGAAGATGGACATATTATGCTCTCCGACTTTGACCTTTCCCTCCGTTGTGCTGTTAGTCCAACCCTTGTTAAAAGCACAACTATGGATTCCGAGCTTTTAAGAAAGAATCCAACATATTGTGCTCAGCCTGCATGTATCCAGCCACCTTCCTGCATCCAGCCATCATGTGTTGCTCCTACCACATGCTTTTCACCACGGTTCTTCTCTAGCAAATCAAAGAAGGACCGCAAGCCCAAAAACGAAATTGGTAACCAAGTGAGTCCATTACCGGAGCTCGTTGCTGAGCCTACTGATGCTCGGTCCATGTCATTTGTTGGAACCCATGAATACTTGGCACCTGAGATCATTAAGGGTGAAGGTCATGGGAGTGCAGTTGATTGGTGGACTTACGGAATCTTTCTATATGAGTTGTTGTTTGGTAAGACTCCTTTCAAGGGATCTGGCAACCGAGCAACATTGTTTAATGTTGTAGGTCAGCCGCTGCGATTTCCCGAAGCGCCTGTTGTGAGTTTTGCAGCAAGGGATCTTATAAGGGGGTTGCTTGTAAAGGAACCTCAGCACAGATTGGCATATAAAAGAGGTGCTACTGAGATTAAGCAACATCCCTTTTTCGAAGGTGTGAATTGGGCATTGATCCGTTGTGCTACCCCACCCGAGATTCCAAAGCCTGTAGAGTTCGAGAAGGTACCTTCACCAGCCTCAGCAGCTGTTGAAAAACCTGTTAATCATATGTCAATAGCTAATAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAA 1863 0.4509 MLSHGFGQSDLIWNSLAYPMDSKTSSRAHPKHCQKTAGIETLEAKDIRPPSLPDSKAGEPEVIARESILKSVQNSSRQNTVEIPDIKKLGISAETGSASSSALDKEVDPAVNENIDSQESAIDQDKKKSGYGSVKNSCVSSKVSDGASGLAKTSGSAKTSERADFVESGKSSICRGSTSSDVSDESTCSSFSSSINKPHKANDMSWEAIQVLRTRDGVLGLSHFRLLKRLGCGDIGSVYLSELSGTKCHFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLAMEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSTTMDSELLRKNPTYCAQPACIQPPSCIQPSCVAPTTCFSPRFFSSKSKKDRKPKNEIGNQVSPLPELVAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTYGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPVEFEKVPSPASAAVEKPVNHMSIANNQKGSDNYLEFDFF* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0738 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 345 357 IPR008271 GO:0004672|GO:0006468
Lan19g0738 620 SMART serkin_6 224 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0738 620 MobiDBLite consensus disorder prediction 131 161 - -
Lan19g0738 620 CDD STKc_phototropin_like 222 586 - -
Lan19g0738 620 PANTHER FLIPPASE KINASE 1-RELATED 22 620 - -
Lan19g0738 620 MobiDBLite consensus disorder prediction 113 162 - -
Lan19g0738 620 Gene3D Transferase(Phosphotransferase) domain 1 308 379 - -
Lan19g0738 620 MobiDBLite consensus disorder prediction 427 448 - -
Lan19g0738 620 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 22 620 - -
Lan19g0738 620 Gene3D Phosphorylase Kinase; domain 1 222 307 - -
Lan19g0738 620 Pfam Protein kinase domain 459 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0738 620 Pfam Protein kinase domain 225 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0738 620 SUPERFAMILY Protein kinase-like (PK-like) 197 588 IPR011009 -
Lan19g0738 620 Gene3D Transferase(Phosphotransferase) domain 1 456 580 - -
Lan19g0738 620 ProSiteProfiles Protein kinase domain profile. 224 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0738 Lan-Chr19 13791475 13795647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0738 81 620 AGC Kinase Gene Family AT5G47750 79.304 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lan19g0738 Pkinase 5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0738 K08286 - gmx:100781600 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0549 4 7960533 7964783 Lan19g0738 19 13791475 13795647 LSH
Lan19g0738 19 13791475 13795647 Lan16g0326 16 2641625 2645953 LSH