Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0732 ATGGATATTTTCGCCGCCGATGCCGTTTCTCCATTTCCCGATTCCGGCGATCTCATTTACGACGCTCTCTTTTCCACCACCGATATCATCTCCCACCACCACCACAACCACCACAACCCCCAGAAACTCCGCCCTATACGCCCCAACGGAATCTCTTCCCCTCCACATCTTCCTCCTCTTGATGCACCCGGGTCGGGTCATTATTACGGGTTCCCGTTAACTGGTTCATTTTTGGATGACGATGAGAACAATGTTTACGATGACAACTCCTCAGGAAGTACGAAAGAACCTGGCTCGAGAAAGAGAAGCAAAAGGGAGGGAGAAAATCTTGAAAATTTTGTACAGAACTTGGTAACAGAGATGATGGAAAAGCAAGAGCGCATGCATAAAGAATTGGTGGACATGATAGAACAGAAAGAAAATGAAAGAATAATGAGAGAAGAAGCTTGGAGGCATGAGACGATGGAAAAATTTAAAAGAGATGAAGAAGCTAGAGCAGAAGAAAAGTCTCGTAGTTTAGCGATCATATCTTTAATTCAGAATCTAATCGGCCATGAAATTCAAATCCACCAACCAGCCGAAGGTGATGCGAATACCCATAGAGAATTAATCGCTGATCAGAATAACAGTAGATGGCCAGATGTTGAGGTACAAGAACTCATAGCTTTAAGAACTCCCTTGGAACACAAGTTTCAAGTTATGGGACCGAAAGGATCGATGTGGGAGGAGATATCCGAAGCAATGCATAAAAAGGGCTTCAACCGTTCCGCAAAGAAGTGTAAGGAAAAATGGGAAAACATCACCAAGTACTATAAAAGAACAGTGGGAAATGGCAAGAAAAGGCGTCAGAATAGTAAAGCTTGCCCTTACTTTGATGAGTTAGACACTCTGTATAGAAATGGCATCCTCAACCATGGAAGTGCATCAAGCAATACCAACAATGTTACCAAGATTGAAAAAGAGGAAAGTAGAACTCAATAA 981 0.4281 MDIFAADAVSPFPDSGDLIYDALFSTTDIISHHHHNHHNPQKLRPIRPNGISSPPHLPPLDAPGSGHYYGFPLTGSFLDDDENNVYDDNSSGSTKEPGSRKRSKREGENLENFVQNLVTEMMEKQERMHKELVDMIEQKENERIMREEAWRHETMEKFKRDEEARAEEKSRSLAIISLIQNLIGHEIQIHQPAEGDANTHRELIADQNNSRWPDVEVQELIALRTPLEHKFQVMGPKGSMWEEISEAMHKKGFNRSAKKCKEKWENITKYYKRTVGNGKKRRQNSKACPYFDELDTLYRNGILNHGSASSNTNNVTKIEKEESRTQ* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0732 326 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 83 323 - -
Lan19g0732 326 Pfam Myb/SANT-like DNA-binding domain 210 297 IPR044822 -
Lan19g0732 326 MobiDBLite consensus disorder prediction 94 109 - -
Lan19g0732 326 PANTHER - 83 323 - -
Lan19g0732 326 Coils Coil 122 142 - -
Lan19g0732 326 MobiDBLite consensus disorder prediction 32 65 - -
Lan19g0732 326 CDD GT1 210 274 - -
Lan19g0732 326 MobiDBLite consensus disorder prediction 80 109 - -
Lan19g0732 326 MobiDBLite consensus disorder prediction 303 326 - -
Lan19g0732 326 Gene3D - 212 273 - -
Lan19g0732 326 ProSiteProfiles Myb-like domain profile. 204 268 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0732 Lan-Chr19 13714546 13716688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0732 98 300 Trihelix Transcription Factor Family AT5G47660 39.648 5.09e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lan19g0732 Myb_DNA-bind_4 8.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0732 - - pvu:PHAVU_006G139200g 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0446 4 6686054 6696746 Lan19g0732 19 13714546 13716688 LSH
Lan19g0732 19 13714546 13716688 Lan16g0333 16 2700130 2702645 LSH