Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0727 ATGGGTCGTTCTCGCGGTAATTTTCACCATGCTGATGAGGACCCCAATCAAAGGTCAAGGAGAAAAAAGAATGCTGCCAGTGGAGAAAATTTAGAATCTGGAGCTGCAGGCCAAGGAGCAAGTGAAGGGAAAAGGGCTTTGTATCACTGCAATTATTGTAATAAAGATATTACAGGAAAAATCCGTACGAAGTGTGCCATGTGCCCAGACTTTGACCTATGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCCCACAAAAGCAATCACCCTTACAGAGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATTCTGCTTTTAGAGGGAATTGAAATGTACGGCTTGGGAAATTGGACAGAAGTTGCTGAGCATGTTGGGACAAAGAACAAGGAATCATGCATTGAACACTTCAAGAATGTGTACTTGAACTCCCCATTCTTTCCTCTTCCGGACATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTTCTTGCCATGGCAAAAGGGCAGGGTGAGGACAAGAAAGGAATTTCCATGGGGGATCTTGGTTTAAAGGAAGAATCTCCTTTTTCTCCATCTAGAGTCAAAGGAGAAGATTCACATAAAGGTGGTTCCTCTAGTCGTTTGCTTTCTAGTTTAAACTCAGAGTCAGAATCCGGTCCTGGTGGTATGAGTCATGCTTCAGTTGCTGCTAATCAGAAGGCATCCAATTCAGGCCGGGGAAAAGATGGACCCGGAGTCATTAAAATGGAAGATCCTCAAGTAGACAGAAACTTTGGAGGCAAAAAGCCAAGTTCCTTGGGAAATGGAGGTCCTTCTTTAGTAGAACCAAGTGGTTATAACCAAAAAAGACAGGAATTTGATCCTGAATATGATAATGACGCTGAACAACTACTTGCTGAAATGGAATTTAAGGACGCTGACACGGAGGAAGAGCGGGAGCTGAAATTACGTGTATTACGTATCTATGGAAAAAGGCTTGACGAAAGAAATCGTAGAAAGGATTTCATACTCGAAAGAAATTTGTTATACCCAAATCCATTTGAGAAGGATTTAACACCTGAGGAGAAGGCAATATGTCGGAAATATGACTTCTTCATGCGCTTTCATACCAAAGAAGAGCATGAAGAATTACTTAGAACAGTTATCTCTGAACATAGAACACTTAAAAGAATTCAAGAACTTAAGGAAGCCCAGGCTGCTGGTTGCCGCAATGCAGCTGAAGCAGATAGATATCTGATGCATAAGAGAAGAAGGGTAGCAGAAGAAACTGCCTGTAGGGCTAAAGAAGCTGCTCAGGGGGTTCCAAATGCACTAATGTCTCCGGAATCTACTGGCAAGGATTTGAGTACAAGACCTGCAGGGCCTGCTACTTCAAGCTCCGTCAATGAGATGGATGTAACAGGATACTATGGGGCAGATTTACTTTCTGAACCTGAGAAACGTTTATGCTGTGAGCTAAGGTTGTCTCCAGCCATATATTTGAAGATGCAAGAGCGACTGTCTCTAGAAATACTTAGCGGCACTGTATCTACAAAATCGGATGCTCATCAATTATTCAAGATGGATGCCATCAAAGTGGACAGGGTATATGATATGCTCATTAAAAAGGGAATTGGTTCACCCTGA 1659 0.4231 MGRSRGNFHHADEDPNQRSRRKKNAASGENLESGAAGQGASEGKRALYHCNYCNKDITGKIRTKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHFKNVYLNSPFFPLPDMSHVVGKNRKELLAMAKGQGEDKKGISMGDLGLKEESPFSPSRVKGEDSHKGGSSSRLLSSLNSESESGPGGMSHASVAANQKASNSGRGKDGPGVIKMEDPQVDRNFGGKKPSSLGNGGPSLVEPSGYNQKRQEFDPEYDNDAEQLLAEMEFKDADTEEERELKLRVLRIYGKRLDERNRRKDFILERNLLYPNPFEKDLTPEEKAICRKYDFFMRFHTKEEHEELLRTVISEHRTLKRIQELKEAQAAGCRNAAEADRYLMHKRRRVAEETACRAKEAAQGVPNALMSPESTGKDLSTRPAGPATSSSVNEMDVTGYYGADLLSEPEKRLCCELRLSPAIYLKMQERLSLEILSGTVSTKSDAHQLFKMDAIKVDRVYDMLIKKGIGSP* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0727 552 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 551 IPR034318 GO:0003713|GO:0006357|GO:0035065
Lan19g0727 552 ProSiteProfiles SWIRM domain profile. 466 552 IPR007526 GO:0005515
Lan19g0727 552 SUPERFAMILY RING/U-box 48 110 - -
Lan19g0727 552 MobiDBLite consensus disorder prediction 1 38 - -
Lan19g0727 552 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Lan19g0727 552 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Lan19g0727 552 SMART sant 104 153 IPR001005 -
Lan19g0727 552 MobiDBLite consensus disorder prediction 214 232 - -
Lan19g0727 552 Gene3D - 40 96 IPR043145 -
Lan19g0727 552 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Lan19g0727 552 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Lan19g0727 552 MobiDBLite consensus disorder prediction 1 27 - -
Lan19g0727 552 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 551 - -
Lan19g0727 552 MobiDBLite consensus disorder prediction 442 473 - -
Lan19g0727 552 SMART zz_5 44 89 IPR000433 GO:0008270
Lan19g0727 552 SUPERFAMILY Homeodomain-like 458 549 IPR009057 -
Lan19g0727 552 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Lan19g0727 552 Pfam Zinc finger, ZZ type 47 88 IPR000433 GO:0008270
Lan19g0727 552 MobiDBLite consensus disorder prediction 176 296 - -
Lan19g0727 552 MobiDBLite consensus disorder prediction 448 473 - -
Lan19g0727 552 MobiDBLite consensus disorder prediction 176 191 - -
Lan19g0727 552 CDD ZZ_ADA2 48 96 IPR041983 -
Lan19g0727 552 PIRSF Txn_adaptor_ADA2 35 552 IPR016827 GO:0003713|GO:0006357|GO:0035065
Lan19g0727 552 Gene3D - 102 153 - -
Lan19g0727 552 CDD SANT 108 150 IPR001005 -
Lan19g0727 552 Gene3D - 467 550 IPR036388 -
Lan19g0727 552 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0727 Lan-Chr19 13623428 13629405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0727 1 550 EF-hand Containing Proteins AT3G07740 46.261 7.34e-164 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan19g0727 Myb_DNA-binding 7.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0727 K11314 - gmx:100811887 966.452