Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0719 ATGGAAATGGACCCTGGCAAACTTTTCATTGGAGGGATTTCCTGGGACACAAATGAAGACCGACTCAGACAGTATTTCCAGAATTTTGGAGATGTAGTGGAAGCTGTTATAATGAAGGATCGGACCACAGGACGTGCCCGTGGTTTCGGGTTTATTGTTTTTGCTGATCCTTCTGTTGCTGAGCGAGTTGTTATGGAGAAGCATGTCATAGATGGAAGAACTGTTGAAGCAAAAAAAGCTGTCCCTAGAGATGATCAGAATGTTCTGAACAGAAGCAACAGCAGCAGTCATGGGTCTCCCGGTCCTACTCCTACCCGCACAAAGAAAATATTTGTTGGAGGTCTAGCATCCACAGTTACTGAGAGTGACTTTAAGAGTTACTTTGATCAGTTTGGAACAATTACAGATGTTGTCGTGATGTATGACCATAACACTCAAAGGCCAAGAGGTTTCGGATTCATCACCTTTGATTCTGAGGATGGAGTTGAGAAGGTGCTCTACAAAACTTTTCATGAATTGCATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCGAAGGAATTATCTCCAAGTCCAAGTAGAGCTCAGATAGGTGGATATAACTATGGTCTAAGTAGAGTTAGTAGCTTTGCTAATGGTTTTCTTCAGGGATATAATCCAAGTCTGGTTGGAGGGAACGGACTTAGAATAGACGACAGATTGAGTCCTATTACTGTTGGTCGCAATGGATATCCTCTTATGAGTCCTACTTATGGGTCAGGACTCAATCTTGAGCCACCATTGAGCCAACTTCTCTTAGGACGGGCATTGAACCCTTCATATAGTGGAAGTCCGAGCAGGTATGTTAATGCCATAGGGTATGCTGGTACAAGTGCAGGTAACAATTCAACCATAAGTTCAGCAAATCAGAATTTGTGGGGGAACGGGAATCTTAACTATGCTACTAACCATAGAAGCTCTGATTCCTTTGCTGGATATGGAAGCGAAAATTCAAACATGGGTTCTTTTGGTCGAATTGGACCACTTTGGAATTCCTCCCTTGGTATTGATCAAGCTGGAACCATTGGCTCTGGATATGGTAAGAGCAGTCTTAGTTATAGCTCTGGAGATGTGTTTTTAGGGTCAAAAGCAGTAGGTTATGGAAAAAGTCGGGAAAACATTGCTGCACCGGCTTCATCATATGCTGCTCTACCAAACGGAAGCTATGATGATGCATATAATTACAAAGATAATACTTATGAGACCGCTGGGTCATTCTATGGGGACCATTGGGGATCATCACCTTCAGAACTAGCAAATGCTGGTTTTCTTGGTTTTGGCCTCGGAAATGCTGTTTCTGATTTAATGAGCAAAAGTTCCGGTGGCCATGTTGAGGCTTATGCTGTTTCCAATACACAACCAGATAGAGGTATTGCTGCCTAG 1422 0.4297 MEMDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFIVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVLNRSNSSSHGSPGPTPTRTKKIFVGGLASTVTESDFKSYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEDGVEKVLYKTFHELHGKMVEVKRAVPKELSPSPSRAQIGGYNYGLSRVSSFANGFLQGYNPSLVGGNGLRIDDRLSPITVGRNGYPLMSPTYGSGLNLEPPLSQLLLGRALNPSYSGSPSRYVNAIGYAGTSAGNNSTISSANQNLWGNGNLNYATNHRSSDSFAGYGSENSNMGSFGRIGPLWNSSLGIDQAGTIGSGYGKSSLSYSSGDVFLGSKAVGYGKSRENIAAPASSYAALPNGSYDDAYNYKDNTYETAGSFYGDHWGSSPSELANAGFLGFGLGNAVSDLMSKSSGGHVEAYAVSNTQPDRGIAA* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0719 473 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Lan19g0719 473 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 473 - -
Lan19g0719 473 MobiDBLite consensus disorder prediction 86 103 - -
Lan19g0719 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lan19g0719 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Lan19g0719 473 MobiDBLite consensus disorder prediction 81 108 - -
Lan19g0719 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Lan19g0719 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 167 IPR000504 GO:0003723
Lan19g0719 473 Gene3D - 105 194 IPR012677 -
Lan19g0719 473 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 473 - -
Lan19g0719 473 Gene3D - 5 88 IPR012677 -
Lan19g0719 473 SMART rrm1_1 109 181 IPR000504 GO:0003723
Lan19g0719 473 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lan19g0719 473 SUPERFAMILY RNA-binding domain, RBD 99 205 IPR035979 GO:0003676
Lan19g0719 473 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lan19g0719 473 CDD RRM2_DAZAP1 106 185 IPR034131 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0719 Lan-Chr19 13513041 13517770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0719 8 198 Eukaryotic Initiation Factors Gene Family AT2G36660 28.643 7.44e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0719 K14411 - pvy:116115801 589.341