Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0702 ATGGGGAAATCAGGGGGTAGAAGAAAAAAGGGTAGTGCTTCAAATTCAAACAAAGCTTCTGTTGATAATTCAGTAGCCCCGATTACTAATGGTGGTGTGGAATTGGATTCCTCAATATTTTTGAAGAGAGCCCATGAGCTCAAAGAAGAGGGGAATAGAAGGTTCCAGAATAAGGACTTTGTTGGTGCCTTAAAACAGTATGAGAATGCCCTTAAACTAACCCCTAAGACCCACCCGGATAGGGCTGTTTTCCATAGCAACAAAGCTGCTTGTTTGATACAAATGAAACCTATTGATTATGAGACTGTGATTGCCGAGTGCACCATGGCACTTCAGGTGCAGCCCCAGTTCGTTAGAGCACTCCTTCGGAGGGCTCGGGCATTTGAGGCTGTAGGGAAGTATGAAATGGCTATGCTTGATGTACAAGTGCTATTGGGAGTTGAACCTAATCATGGAGATACTTTGGAGATTGCTCAGAGATTGAGGACCACATTGGGAACTCGCCAGGAAGCCCAACAGGATCTTCATAGTCGCCCTTCCCCTGCTGCCCTTGGCGCTTCTGCGGTTCGTGGTGCTCCTATTGCAGGTTTAGGGCCATCTTTACCTGCCCGGCCAGGACCTAAGAAGGGGGCAAGTGCAGCTGTGGGATCGGTTGTGTCACCTAATTACATGACAGAGAATCCCCAAGTGGTTTTATCTGCTGAAAATGGTCCTGAGAACAAGTCTCAATTGCCAAAAATTGTGTTGAAGCCCTCAATTGGCTCTGCTAATTCTTCTAATCCAAGAAAGGGAAACCAGAAGGAACAGTTGTCTCATTCAGCAATTGTTTGTAGACAGCATTCACAGGTTTTAATTCGTTGGAGACCTTTGAAGCTTGTTTATGATCATGACATCAGGCTTGCTGAGGTGCCAGTGAATTGCAGTTTTAGAGTGCTTAGAGAATTAGTGACCAAAAGATTTCCATCATCGAAGTCAGTTTTGATCAAGTATAAGGATAATGATGGTGATTTGGTTACTATAACCTCTACGGATGAACTCAGATTGGCTGAGTGTAGTGTGGATAGCCATCTCATGAAAGAACCCGAAGCATATAAAAGTGATTCAGTTGGGATGCTGAGACTAAATATTGTCGAAGTTAGTCCTGAGCAGGAGCCACCTGTATTGGAAGAAGAGGAAGAAAAACTTGTTGAGAGCGAAGGGCTCAAGGGAGATGAGAGTGAGTCTCATTCTCCCAGTGAATCTGTCTCTGAAATCCCTGTTGCTAAAGCCGAGGCTGATAAGATAGAGAAAGATGCCCCAAAGGAAAAGGCAGGTACCACAGAAGATACCGAATCCAAGGAAGTGGAGATGGATGATTGGTTGTTTGAATTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGATCCAGATGCTCATATTGACTTGCATGAGCTTGGGATGGAGTTTTGTTCAGAGGCACTTGAGGAAATTGTAACTGGTGGGGAGGCTCAGGATCTCTTTGACAAAGCTGCTTCAAAGTTCCAGGAGGTGGCTGCTTTGGCATTCTTCAATTGGGGAAATGTTTACATGTGTGCTGCTAGGAAGCGTATCCCCTTAGACGAGTCAGCTGGGGAGGAAATAGTGGCAGAACGGACTCAAGTCACTTATGACTGGGTCAAGGAAAAATATTCATTGGCAAGGGAGAAGTATGAGCAAGCACTCGTAATTAAACCAGATTTCTATGAAGGGTTGCTGGCTTTGGGGCAGCAACAATTTGAAATGGCTAAGCTTCATTGGTCTTTTGCACTTGCTAACAAGATAGATCTATCAGGCTGGGATCCAACAGAGACAATTCAACTTTTTGACAGTGCAGAGGAGAAGATGAAAGCGGCAACTGGTATGTGGGAGAATATGGAGGAGCAGAGGGCAAAGGAACTGCAGGACCCAAATACAAGCAAGAAAGAAGAACTATTGAGAAGAAGAAAAAAACAGGGAGGTCCCACAGAAGGTGAGTCATCCATTGTTGGTCAAGGTGATATATCTGCAAAAGAAGCTGCTGAGCAAGCAGCCGTCATGAAGTCACAGATTCACCTTTTCTGGGGTAATATGCTATATGAACGATCCCAAGTTGAATGTAAATTAGGAATGGGTGACTGGAATAAAAATCTGGATGCTGCAGTCGAGCGCTTTAAGCTTGCAGGAGCGTCTGAGGCCGACATTTCAATGGTGCTAAAGAATCATCACTCCAATGTAGATGCAAAGGAAGGAGAAGTGAAAGGATTGAAAAGTCATGACCCGATTACACTGGCAAAATAG 2295 0.4466 MGKSGGRRKKGSASNSNKASVDNSVAPITNGGVELDSSIFLKRAHELKEEGNRRFQNKDFVGALKQYENALKLTPKTHPDRAVFHSNKAACLIQMKPIDYETVIAECTMALQVQPQFVRALLRRARAFEAVGKYEMAMLDVQVLLGVEPNHGDTLEIAQRLRTTLGTRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPSLPARPGPKKGASAAVGSVVSPNYMTENPQVVLSAENGPENKSQLPKIVLKPSIGSANSSNPRKGNQKEQLSHSAIVCRQHSQVLIRWRPLKLVYDHDIRLAEVPVNCSFRVLRELVTKRFPSSKSVLIKYKDNDGDLVTITSTDELRLAECSVDSHLMKEPEAYKSDSVGMLRLNIVEVSPEQEPPVLEEEEEKLVESEGLKGDESESHSPSESVSEIPVAKAEADKIEKDAPKEKAGTTEDTESKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMEFCSEALEEIVTGGEAQDLFDKAASKFQEVAALAFFNWGNVYMCAARKRIPLDESAGEEIVAERTQVTYDWVKEKYSLAREKYEQALVIKPDFYEGLLALGQQQFEMAKLHWSFALANKIDLSGWDPTETIQLFDSAEEKMKAATGMWENMEEQRAKELQDPNTSKKEELLRRRKKQGGPTEGESSIVGQGDISAKEAAEQAAVMKSQIHLFWGNMLYERSQVECKLGMGDWNKNLDAAVERFKLAGASEADISMVLKNHHSNVDAKEGEVKGLKSHDPITLAK* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0702 764 CDD PB1 290 349 - -
Lan19g0702 764 Gene3D Tetratricopeptide repeat domain 493 660 IPR011990 GO:0005515
Lan19g0702 764 Gene3D - 289 359 - -
Lan19g0702 764 SUPERFAMILY CAD & PB1 domains 285 350 - -
Lan19g0702 764 MobiDBLite consensus disorder prediction 252 272 - -
Lan19g0702 764 SUPERFAMILY TPR-like 41 175 IPR011990 GO:0005515
Lan19g0702 764 ProSiteProfiles PB1 domain profile. 287 379 IPR000270 GO:0005515
Lan19g0702 764 PANTHER PROTEIN CLMP1 1 752 IPR044517 -
Lan19g0702 764 SMART tpr_5 82 117 IPR019734 GO:0005515
Lan19g0702 764 SMART tpr_5 118 151 IPR019734 GO:0005515
Lan19g0702 764 SMART tpr_5 44 77 IPR019734 GO:0005515
Lan19g0702 764 Coils Coil 614 634 - -
Lan19g0702 764 Gene3D Tetratricopeptide repeat domain 41 173 IPR011990 GO:0005515
Lan19g0702 764 MobiDBLite consensus disorder prediction 9 27 - -
Lan19g0702 764 MobiDBLite consensus disorder prediction 381 447 - -
Lan19g0702 764 MobiDBLite consensus disorder prediction 251 272 - -
Lan19g0702 764 MobiDBLite consensus disorder prediction 634 670 - -
Lan19g0702 764 PANTHER - 1 752 - -
Lan19g0702 764 SUPERFAMILY TPR-like 495 590 IPR011990 GO:0005515
Lan19g0702 764 MobiDBLite consensus disorder prediction 420 444 - -
Lan19g0702 764 MobiDBLite consensus disorder prediction 1 27 - -
Lan19g0702 764 MobiDBLite consensus disorder prediction 395 411 - -
Lan19g0702 764 MobiDBLite consensus disorder prediction 634 660 - -
Lan19g0702 764 Pfam PB1 domain 287 376 IPR000270 GO:0005515
Lan19g0702 764 ProSiteProfiles TPR repeat profile. 44 77 IPR019734 GO:0005515
Lan19g0702 764 SMART PB1_new 287 379 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0702 Lan-Chr19 13264314 13267290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0702 41 165 Calmodulin-binding Proteins AT3G25230 27.941 2.58e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0702 - - var:108342436 1065.06