Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0698 ATGAAGCCTCAATACATAGTCGATGAATCTAAGAGAAGGGCAACATACAGAGTAAGGAAAGTTGGTATGAAGAAGAAGCTTCAGGAGATAAGTACTCTATGCGGAATCCAAGCATGTGGCATCATATATGGTCCAAATGAAACTGTACCAGAAGTTTGGCCATCTCACTCGGAGGTTCAAAGGGTGATCAATAGGTTCTATGCAATGTCCGAGATTGATCAAAAGAAAAATATGTTAACTCAAGAAAGCTTTCTGAAGCAAAACTTCAGAAAGGTCCAAGATCAATTGAAGAAAGCACGAGATGAGAACAAAAAGAAAGAAATGGAGCTTCTCATGTTCCATTGCTTGGGTTCTGGGAGGATTGTTCATAGTGCTGACACTATTGATATGAATTATTTCTTGTTGGTGATAAACCAGAATCTGAGAGGTGTTAATGGGAAAAAAAGTACGGACCAACCACAACATGGGATAGGTGTGTCTTCTAATGGAACAGAAAATTTGAATGGAGAAAGGATAATTGTGGATGGTCTTAACCAAGGGATCGTGCAGACCAATATAGGTGCTATGCAGAGGCAGGGTTGGTCTTCTGACTCAACAAGAGGGAGAGGTAATGCAATGTTTCCATTTGGAGATTATAATCACTCAAGTGGCCTTGAGCATGATCCTTCTTTCCCTTGA 678 0.4027 MKPQYIVDESKRRATYRVRKVGMKKKLQEISTLCGIQACGIIYGPNETVPEVWPSHSEVQRVINRFYAMSEIDQKKNMLTQESFLKQNFRKVQDQLKKARDENKKKEMELLMFHCLGSGRIVHSADTIDMNYFLLVINQNLRGVNGKKSTDQPQHGIGVSSNGTENLNGERIIVDGLNQGIVQTNIGAMQRQGWSSDSTRGRGNAMFPFGDYNHSSGLEHDPSFP* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0698 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 5 48 IPR002100 GO:0003677|GO:0046983
Lan19g0698 225 Coils Coil 82 109 - -
Lan19g0698 225 PANTHER MADS BOX PROTEIN 4 162 - -
Lan19g0698 225 CDD MADS_SRF_like 4 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lan19g0698 225 SUPERFAMILY SRF-like 3 89 IPR036879 GO:0003677|GO:0046983
Lan19g0698 225 SMART madsneu2 1 55 IPR002100 GO:0003677|GO:0046983
Lan19g0698 225 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 4 162 - -
Lan19g0698 225 MobiDBLite consensus disorder prediction 205 225 - -
Lan19g0698 225 Gene3D - 8 93 IPR036879 GO:0003677|GO:0046983
Lan19g0698 225 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0698 Lan-Chr19 13094324 13095001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0698 1 145 Type I MADS-box Gene Family AT5G48670 44.828 6.94e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan19g0698 SRF-TF 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0698 - - lang:109344582 239.965