Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0696 ATGGAGGGTGGTAGTTCAAATGGCACTTCTTGTTTGATGCCTTTTGGAGAGAACAGTGGTGGGCTATATCCAATAATGGTGATGCCTTTAGTGACTTCTAATCATGGTGGTCATCATCCAATAAATCCTCATAATCTTAATCATAATAATAGTAACAATAATTTTACAACTAATGGTACTATCAATGAAAACACAAACTGTCTCTTCCCTTCTATGCCTTCTTCCACTAATGATCATCAACACCAAAACCACAACAACAGTGGAGGAAACCCTCCTCTCATGCTAGAGAATAATCGCAACAGCAACACTGGGATAGGTTATTATTTCATGGAGAGTGACCACAACAACAACAATGGAAGCTCCTCTTCCTCTTCTTCTGCTGACAAGGCCAAAATCATGGCCCATCCTTACTATCACCGTCTCTTGGCAGCATACGTCAGTTGTCAAAAGGTTGGAGCACCGCCTGATGTGGTGGCAAGGTTAGAAGAAGCATGTGCATCTGCAGTGGCTATGGCAGGAGACACAGCTGGATCAGCATGCTTAGGTGAAGATCCAGCACTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGACCAAGTATGAACAAGAACTCTCCAAACCCTTGAAGGAAGCCATGCTCTTTCTTCAAAGGATCGAATTCCAGTTCAAAAATCTCACTGTTTCTTCTTCTGATCTTGTTTGTAATGAAGCTACAGAAAGGAATGGATCATCTGAAGAAGATGTTGATCTACACAACATTATAGATCCTCAAGTAGAAGACAGAGAGTTGAAGGGTCATCTTTTGCGCAAGTATAGCGGATACTTAGGGAGTCTAAAGCAAGAATTCATGAAGAAGAGGAAAAAAGGAAAGCTACCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCTCTGGCAGAATCAACAGGTCTAGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAAGACATGCCATTTTATTCCAATATGATGGATCCAAACCACCCACAATATTACATGGATAATGTTCTGAGCCATCCTTTTCCTATGGATCTCTCCAACACAATGCTCTAG 1152 0.4175 MEGGSSNGTSCLMPFGENSGGLYPIMVMPLVTSNHGGHHPINPHNLNHNNSNNNFTTNGTINENTNCLFPSMPSSTNDHQHQNHNNSGGNPPLMLENNRNSNTGIGYYFMESDHNNNNGSSSSSSSADKAKIMAHPYYHRLLAAYVSCQKVGAPPDVVARLEEACASAVAMAGDTAGSACLGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIEFQFKNLTVSSSDLVCNEATERNGSSEEDVDLHNIIDPQVEDRELKGHLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMPFYSNMMDPNHPQYYMDNVLSHPFPMDLSNTML* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0696 383 SMART KNOX2_2 177 228 IPR005541 GO:0003677|GO:0005634
Lan19g0696 383 Gene3D - 288 350 - -
Lan19g0696 383 CDD homeodomain 295 347 IPR001356 GO:0003677
Lan19g0696 383 PANTHER - 1 372 - -
Lan19g0696 383 MobiDBLite consensus disorder prediction 47 127 - -
Lan19g0696 383 Pfam KNOX2 domain 181 227 IPR005541 GO:0003677|GO:0005634
Lan19g0696 383 SMART KNOX1_2 126 170 IPR005540 GO:0003677|GO:0005634
Lan19g0696 383 SMART HOX_1 285 350 IPR001356 GO:0003677
Lan19g0696 383 ProSitePatterns 'Homeobox' domain signature. 321 344 IPR017970 GO:0000981|GO:0006355
Lan19g0696 383 SMART ELK_2 263 284 IPR005539 GO:0003677
Lan19g0696 383 Pfam KNOX1 domain 129 166 IPR005540 GO:0003677|GO:0005634
Lan19g0696 383 Pfam Homeobox KN domain 303 342 IPR008422 GO:0003677|GO:0006355
Lan19g0696 383 ProSiteProfiles ELK domain profile. 263 283 IPR005539 GO:0003677
Lan19g0696 383 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 372 - -
Lan19g0696 383 ProSiteProfiles 'Homeobox' domain profile. 283 346 IPR001356 GO:0003677
Lan19g0696 383 Pfam ELK domain 263 284 IPR005539 GO:0003677
Lan19g0696 383 SUPERFAMILY Homeodomain-like 285 357 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0696 Lan-Chr19 13036169 13043279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0696 107 383 Homeobox Transcription Factor Family AT1G62360 73.540 4.44e-124 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lan19g0696 KNOX2 2.8e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0425 4 6414856 6421460 Lan19g0696 19 13036169 13043279 LSH