Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0688 ATGGATTGGTCTAGGGGTCACACCATAGGACGGGGCTCCACGGCCGCCGTCTATAAAGCTGAGTCTCGGCACTCTGGTAAGGTTTTTGCCGTAAAGTCTGCCGAGCTCCACCGGTCTGAAATTTTAAAGAGAGAAAAGGAGATTCTTTCCGCATTGAATTGTCCTCAAATTGTGTCATACCAAGGTTTTGATGTTACATTCGAAAATGGTACACACTACTATAACTTGTTCATGGAATATGCGCCACGTGGCACGATCACCAACGTGGTTCGCCATGATAAGGTGGTGGAAGAAGCTCCACTGAGGTCTTACACGCGCCAAATACTGCAAGGGCTGAACTACCTTCATGCAAATGGGATAGTGCATTGCGACGTGAAGGGACAGAACGTGTTGGTCACGGACCAAGGTGCGAAAATTGCTGACTTTGGTTGCGCCAAGAGGGTGGGCGAGGCGGCAGCACCGGTGGCAGGAACACCGGCGTTCATGGCACCTGAGGTGGCGCGTGGGGAGCAACAGGGGTTCCCTGCTGACGTGTGGGCACTGGGGTGCACTGTTTTGGAGATGATCACCGGGAAGCAACCGTGGCAGGGTGTTTCTGATGTGGCGGCGGTGCTTTACCGGGTTGGGTACTCCGGCGAGGTTCCGGTGATTCCAGATTATATGTCTGAGGAAGGGAAGGATTTTTTGAGTAAGTGTTTTAAAAGTGACCCTTTTGAAAGATGCATAGTGAGTGAGCTTCTGAATCATGATTTTGTTAGAGAATTGAATTTGGTGTGTAATGAATTTGCATTTGCATGTGATTTTGAGACACCAACAAGTGTGTTGGAAAAAGGGTCCTTTTGGGACTCAAAGACAAATCAAGATGTGACACATGGTAATTCTTCATGGAATTTTTCTAGTGCTAAAGACAGAATTAATATGTTGTGTACTGCTGAGCCTTTTTGGGACTGGGATGATGATGATCAAGTGGAATGGGTTATAGTGAGAATGACCCGATTTTCGGTTGGAAATCGGCTCTGCAATTTAGGAAGAGGTGAGACTAAAAACAATGACAAGGAAGTGTTTGAGGGAATGTCCTTGGGGTCTATTGAGAAAATGGAGGATTATGGACCAGACACAATATGCAATTGCATCCTTAAAGAGGACATTGATTTGGTCCCTTGTTATGAACCAAAAATTCTGGTTGCCAATGTAATTGAATTTAGAAGATTGGATGGTGTTATTGATGAATGTTACCTAAGAAGCTTTAGTAGAGAATTGTTATTATGCTGTACATGTCTAGTGCTTTTTTCCCTTTGGAAATATGATGATTGTTTCAAGAAACATTTTTTTATCATGCAACTCTTTCTGCTCTATCTTTCCCTGTTTAGTTCCACTTTGGATCAATTCAACACTTTACAATTTATTATTGGGCAATGTCATTAA 1425 0.4407 MDWSRGHTIGRGSTAAVYKAESRHSGKVFAVKSAELHRSEILKREKEILSALNCPQIVSYQGFDVTFENGTHYYNLFMEYAPRGTITNVVRHDKVVEEAPLRSYTRQILQGLNYLHANGIVHCDVKGQNVLVTDQGAKIADFGCAKRVGEAAAPVAGTPAFMAPEVARGEQQGFPADVWALGCTVLEMITGKQPWQGVSDVAAVLYRVGYSGEVPVIPDYMSEEGKDFLSKCFKSDPFERCIVSELLNHDFVRELNLVCNEFAFACDFETPTSVLEKGSFWDSKTNQDVTHGNSSWNFSSAKDRINMLCTAEPFWDWDDDDQVEWVIVRMTRFSVGNRLCNLGRGETKNNDKEVFEGMSLGSIEKMEDYGPDTICNCILKEDIDLVPCYEPKILVANVIEFRRLDGVIDECYLRSFSRELLLCCTCLVLFSLWKYDDCFKKHFFIMQLFLLYLSLFSSTLDQFNTLQFIIGQCH* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0688 474 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 335 - -
Lan19g0688 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Lan19g0688 474 Pfam Protein kinase domain 5 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0688 474 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0688 474 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0688 474 Gene3D Transferase(Phosphotransferase) domain 1 2 311 - -
Lan19g0688 474 SUPERFAMILY Protein kinase-like (PK-like) 2 279 IPR011009 -
Lan19g0688 474 PANTHER MAP KINASE KINASE KINASE 1 335 - -
Lan19g0688 474 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Lan19g0688 474 CDD STKc_MAPKKK 2 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0688 Lan-Chr19 12938676 12940198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0688 1 329 MAP Kinase Kinase Kinase AT1G05100 49.568 1.18e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lan19g0688 Pkinase 2.6e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0688 K20716 - gmx:100802174 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0688 19 12938676 12940198 Lan16g0379 16 3725804 3727025 LSH