Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0686 ATGTGCGGTGACGCAACTAACTGGGACGAAGATGGTTACAAAGAAAGCATACTGAAGGAGAGAGACTTTCAAACACGAACCGTTTTCAGAACCGCTTGGGCTCCTTCTCTGAACCCTAACCCTGATACTCTCCTCGTTGCTTCCAGCGACGGTTCTATCGCCTCATACTCAATCTCTTCCTGCATCTCTAATCTCAACACTCATTCCGGTTTATCCAATACCAACAACGATAGGTTATTGGCTCAACCAAGTTGCTTCATTCAAGGCCATGATGGACCTACATACGATCTCAAATTCTATGGTGATGGTGAAGATGCTTTGTTGCTAAGTTGTGGTGATGATGGTCGGATCCGAGGATGGAGATGGAAGGAACTTACAGGCTCAAATTGTTCTGTTTCTTCACATGGAAATGATATCAATCCTATACTTGACCTGGTGAATCCTCAACACAGAGGTCCTTGGGGTGCGCTTTCACCTATCCCTGAGAATAATGCTATTGCTGTTAATACTAAGGAGGGGTCTATTTTTGCTGCTTCTGGTGATTCTTATGCATATTCTTGGGATTTGGAAACTGGTAAAGTAAAAATGGTCTTCAAGGGGCACTCAGACTACTTGCATTGTATAGTTGCTCGCAACTCATCCAATCAGATCATAACAGGTTCAGAGGATGGGACCGCACGAATTTGGGATTGCAAAAGTGGAAAGTCTGTCCAAGTTATTAACCCAGGAAAAGATTTTAAATTAGAAGGATCTGTTTCATGGGTTGGTTGTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTCGTGGGCGGAATATATCACTTTGGAACCTTCCTGCTTCAGAGTGCATATCAAGGATTTCATCCCAGGCTACTGTACAGGACATGTTATTTGAAAATAATCAAATTTTGGCAGTTGGTGCCGATCCTATACTCAATCGCTTTGACATGAATGGTGTGATCCTTTCACAAATACAATGTGCTCCTCAATCCGCTTTCTCTATCTCGCTATATCCAACAGGAGTTGTGGCAGTTGGAGGTTATGGATGTTGTGTGGATGTTATCTCGCAATTCGGCAGCCACATGTGTACGTTTCATTGCCAATGTGTTTAA 1119 0.4334 MCGDATNWDEDGYKESILKERDFQTRTVFRTAWAPSLNPNPDTLLVASSDGSIASYSISSCISNLNTHSGLSNTNNDRLLAQPSCFIQGHDGPTYDLKFYGDGEDALLLSCGDDGRIRGWRWKELTGSNCSVSSHGNDINPILDLVNPQHRGPWGALSPIPENNAIAVNTKEGSIFAASGDSYAYSWDLETGKVKMVFKGHSDYLHCIVARNSSNQIITGSEDGTARIWDCKSGKSVQVINPGKDFKLEGSVSWVGCVALDASESWLACSRGRNISLWNLPASECISRISSQATVQDMLFENNQILAVGADPILNRFDMNGVILSQIQCAPQSAFSISLYPTGVVAVGGYGCCVDVISQFGSHMCTFHCQCV* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0686 372 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 239 IPR001680 GO:0005515
Lan19g0686 372 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 9 369 IPR042626 -
Lan19g0686 372 SUPERFAMILY WD40 repeat-like 33 359 IPR036322 GO:0005515
Lan19g0686 372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 198 230 - -
Lan19g0686 372 Gene3D - 150 370 IPR015943 GO:0005515
Lan19g0686 372 SMART WD40_4 191 230 IPR001680 GO:0005515
Lan19g0686 372 SMART WD40_4 14 57 IPR001680 GO:0005515
Lan19g0686 372 SMART WD40_4 241 279 IPR001680 GO:0005515
Lan19g0686 372 SMART WD40_4 320 358 IPR001680 GO:0005515
Lan19g0686 372 SMART WD40_4 80 121 IPR001680 GO:0005515
Lan19g0686 372 Gene3D - 7 145 IPR015943 GO:0005515
Lan19g0686 372 Pfam WD domain, G-beta repeat 194 230 IPR001680 GO:0005515
Lan19g0686 372 Pfam WD domain, G-beta repeat 248 279 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0686 171 237 Eukaryotic Initiation Factors Gene Family AT2G46280 33.824 7.49e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0686 K13175 K03257 gmx:100806423 607.831