Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0677 ATGTCTTGCTCCAACCTCACCATGTTGGTGTCTTCCAAACCATCATTATCTGATGCCTCTAACCTCTCATTCCGTTCTTCTCTCAATCATTTTCAACTTCCTTCACAAAACTCTTCTTTATCCTCTCCCACCCCTTCACGTTCTTCTGTCACCCCTCTTCAATGTGGACTCAGAGAGCTTAGGACCCGTATTGATTCTGTCAAGAACACACAAAAGATCACTGAGGCAATGAAGCTTGTTGCTGCTGCTAAAGTCAGAAGAGCCCAAGAAGCTGTTGTTAATGGAAGACCCTTCTCTGAGACCCTTGTTGAGGTTCTTTACAACATCAATGAGCAGCTCCAAACTGAAGACATTGATGCCCCTCTCACGAAAGCTAGGCCTGTGAAGAAGGTTGCACTTGTTGTTTGCACAGGTGATAGAGGACTTTGTGGTGGTTATAACAATGCAATATTGAAAAAGGCTGAGGCTAGAATTGCTGAGTTGAAGACTCTTGGTCTTGATTACACTGTTATTAGTGTTGGTAAAAAGGGTAACACTTATTTCCTTCGTAGGCCTTATATTCCGGTCGATAAGTTTCTCGAAGGCGGCACGCTTCCAACCGCTAAAGAAGCTCAAGCAATTGCTGATGACACCTTTTCACTCTTTGTGAGTGAGGAGGTAGATAAAGTTGAGCTTTTGTACACAAAGTTTGTGTCACTAGTGAAATCAGAACCTGTGATTCATACATTGCTTCCACTCTCACCAAAGGGAGAAATATGTGATATTAATGGTGTTTGTGTCGATGCTGCGGACGATGAATTTTTCAGGTTAACAACTAAGGAAGGAAAGTTAACTGTAGAAAGAGATGTTGTGAGGACTAAGACACCAGATTTTTCACCTATTTTGCAGTTTGAGCAGGATCCAGTTCAGATACTTGATGCACTTTTGCCTCTATATTTGAACAGCCAGATCTTGAGAGCACTTCAGGAATCACTTGCAAGTGAGTTAGCAGCTAGAATGAGTGCCATGAGCAATGCAACTGATAATGCTAGTGAGTTGAAGAAGAACTTGTCGGTTCTCTACAATCGGCAGCGTCAGGCTAAGATCACTGGTGAAATACTGGAAATTGTTGCTGGTGCCAATGCACAAATATAG 1134 0.425 MSCSNLTMLVSSKPSLSDASNLSFRSSLNHFQLPSQNSSLSSPTPSRSSVTPLQCGLRELRTRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTEDIDAPLTKARPVKKVALVVCTGDRGLCGGYNNAILKKAEARIAELKTLGLDYTVISVGKKGNTYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDTFSLFVSEEVDKVELLYTKFVSLVKSEPVIHTLLPLSPKGEICDINGVCVDAADDEFFRLTTKEGKLTVERDVVRTKTPDFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKKNLSVLYNRQRQAKITGEILEIVAGANAQI* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0677 377 Gene3D - 124 247 - -
Lan19g0677 377 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 56 375 IPR035968 GO:0015986|GO:0045261|GO:0046933
Lan19g0677 377 Pfam ATP synthase 57 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan19g0677 377 ProSitePatterns ATP synthase gamma subunit signature. 362 375 IPR023632 -
Lan19g0677 377 PRINTS ATP synthase gamma subunit signature 128 147 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan19g0677 377 PRINTS ATP synthase gamma subunit signature 221 238 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan19g0677 377 PRINTS ATP synthase gamma subunit signature 323 342 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan19g0677 377 PRINTS ATP synthase gamma subunit signature 354 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan19g0677 377 CDD F1-ATPase_gamma 57 373 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan19g0677 377 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 375 - -
Lan19g0677 377 Gene3D ATP synthase, gamma subunit, helix hairpin domain 56 123 - -
Lan19g0677 377 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 56 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan19g0677 377 PANTHER ATP SYNTHASE GAMMA CHAIN 1 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan19g0677 377 Gene3D ATP synthase, gamma subunit, helix hairpin domain 278 376 - -
Lan19g0677 377 Coils Coil 336 356 - -
Lan19g0677 377 Hamap ATP synthase gamma chain [atpG]. 54 376 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0677 Lan-Chr19 12774142 12775708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0677 34 375 Primary Pumps ATPases AT1G15700 71.060 3.96e-177 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0677 K02115 - gmx:100797290 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0413 4 6336306 6337833 Lan19g0677 19 12774142 12775708 LSH