Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0670 ATGATGCAGCCAGGAGGACCCGGAGGTATCGCTCCACCCAACCTGGGTCAGCAACCCTACGTCATGTTGCCACCTCAGCCCCAGCCCCCTCCCATCTGGCAACAACCACCGCCTCAGTCGGTTGCTCCGCCGCAACAGCAGCAATCTCAGCCTACCAGCGCCGATGAGGTCCGTACTCTATGGATCGGTGATTTGCAGTACTGGATGGATGAGAACTATCTATACCAATGCTTTGCTCACACCGGAGAGGTGGCCTCTGTGAAAGTCATTCGTAATAAGCAAACTAATCAATCAGAAGGATATGGGTTTATTGAGTTCAATAGTCGTGCTGGTGCTGAGAGAGTACTTCAATCTTACAATGGATCCATTATGCCCAATGGTGGGCAGCCCTTCAGGTTGAACTGGGCAACATTCAGTGCGGGTGAGAGGCGCCATGATGACAGTCCTGATTACACCATATTTGTTGGTGACTTGGCTGCAGATGTCACCGACTATCTCCTAACAGAGACATTTAGGTCCCGTTTTAACTCTGTGAAGGGTGCAAAAGTTGTGATTGACAGGCTCACTGGTCGGACTAAGGGTTATGGTTTTGTGAGGTTTGCAGATGAAAATGAACAAACAAGGGCCATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGGCCCATGAGGATTGGCCCAGCTGCCAATAAAAACCTGGGAACACCACAAAAAGCTTCATATCAGAATTCTCAAGGCCAAGGCTCCCAGAACGAGAATGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAATGCCACTGATGATTATCTGAGGCAAGTTTTTAGCCAGTATGGAGAGTTGGTTCATGTGAAAATTCCATCAGGCAAGCGATGTGGGTTTGTTCAATTTGCAGACAGGAGCTGTGCAGAGGAGGCCATACGGGCTCTAAATGGAACACTGTTGGGTGGACAAAATTTACGCCTTTCATGGGGCCGCAGTCCTGCGAACAAACAGGCTCAGCCAGATTCAAACCAGTGGAATGGTGGCGGTGGCAGTGGTGGATATTATGGATATACTCAGCAGGGTTATGAAAATTATGGTTATGCTGCTCCTGCTGCCGCTGCTGTGCAGGATCCCAACCTGTATGGCAGTTACCCGGCCGGGTATGCCAACTACCAACCACCACAGCAACAGCAACAAATAGGATATAGTTAA 1206 0.4884 MMQPGGPGGIAPPNLGQQPYVMLPPQPQPPPIWQQPPPQSVAPPQQQQSQPTSADEVRTLWIGDLQYWMDENYLYQCFAHTGEVASVKVIRNKQTNQSEGYGFIEFNSRAGAERVLQSYNGSIMPNGGQPFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYLLTETFRSRFNSVKGAKVVIDRLTGRTKGYGFVRFADENEQTRAMTEMQGVLCSTRPMRIGPAANKNLGTPQKASYQNSQGQGSQNENDPNNTTIFVGNLDPNATDDYLRQVFSQYGELVHVKIPSGKRCGFVQFADRSCAEEAIRALNGTLLGGQNLRLSWGRSPANKQAQPDSNQWNGGGGSGGYYGYTQQGYENYGYAAPAAAAVQDPNLYGSYPAGYANYQPPQQQQQIGYS* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0670 401 CDD RRM1_SECp43_like 59 139 - -
Lan19g0670 401 SMART rrm1_1 152 226 IPR000504 GO:0003723
Lan19g0670 401 SMART rrm1_1 59 134 IPR000504 GO:0003723
Lan19g0670 401 SMART rrm1_1 259 326 IPR000504 GO:0003723
Lan19g0670 401 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 17 398 - -
Lan19g0670 401 MobiDBLite consensus disorder prediction 233 264 - -
Lan19g0670 401 Gene3D - 24 145 IPR012677 -
Lan19g0670 401 SUPERFAMILY RNA-binding domain, RBD 146 249 IPR035979 GO:0003676
Lan19g0670 401 MobiDBLite consensus disorder prediction 226 264 - -
Lan19g0670 401 MobiDBLite consensus disorder prediction 1 55 - -
Lan19g0670 401 MobiDBLite consensus disorder prediction 18 44 - -
Lan19g0670 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 324 IPR000504 GO:0003723
Lan19g0670 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 153 216 IPR000504 GO:0003723
Lan19g0670 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 125 IPR000504 GO:0003723
Lan19g0670 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 17 398 - -
Lan19g0670 401 SUPERFAMILY RNA-binding domain, RBD 26 139 IPR035979 GO:0003676
Lan19g0670 401 CDD RRM2_SECp43_like 150 229 - -
Lan19g0670 401 Gene3D - 150 226 IPR012677 -
Lan19g0670 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 330 IPR000504 GO:0003723
Lan19g0670 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 151 230 IPR000504 GO:0003723
Lan19g0670 401 SUPERFAMILY RNA-binding domain, RBD 245 355 IPR035979 GO:0003676
Lan19g0670 401 Gene3D - 234 367 IPR012677 -
Lan19g0670 401 CDD RRM3_NGR1_NAM8_like 257 328 - -
Lan19g0670 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 138 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0670 Lan-Chr19 12667516 12671607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0670 60 337 Eukaryotic Initiation Factors Gene Family AT4G34110 25.000 1.48e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0670 - - gmx:100801562 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0406 4 6250306 6254548 Lan19g0670 19 12667516 12671607 LSH
Lan19g0670 19 12667516 12671607 Lan16g0400 16 3894011 3899157 LSH
Lan12g1314 12 18824492 18827764 Lan19g0670 19 12667516 12671607 PCT