Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0664 ATGGTGAGGGTTAGTGTCTTGAATGATGCTCTCAAGAGCATGTACAATGCTGAGAAGCGCGGCAAGCGTCAGGTCATGATTAGGCCTTCTTCAAAAGTGATTATAAAGTTCCTTTTGGTTATGCAGAAGCATGGGTACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGAAAAATTGTGGTTGAATTGAATGGAAGACTTAACAAATGTGGGGTTATCAGTCCCCGTTTTGATGTAGGTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTACTCCCTTCAAGACAGTTTGGGTATATTGTGTTGACAACCTCTGCTGGCATCATGGATCATGAAGAAGCAAGGAGAAAGAATGTTGGAGGAAAAGTGCTTGGTTTCTTCTATTAG 393 0.43 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0664 130 PANTHER BNAA02G06730D PROTEIN 1 130 - -
Lan19g0664 130 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lan19g0664 130 Gene3D - 70 130 - -
Lan19g0664 130 SUPERFAMILY Ribosomal protein S8 4 130 IPR035987 GO:0003735|GO:0005840|GO:0006412
Lan19g0664 130 Gene3D - 1 69 - -
Lan19g0664 130 Pfam Ribosomal protein S8 7 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lan19g0664 130 Hamap 30S ribosomal protein S8 [rpsH]. 2 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lan19g0664 130 ProSitePatterns Ribosomal protein S8 signature. 100 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0664 Lan-Chr19 12505259 12507217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0664 1 130 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 97.692 1.74e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0664 K02957 - cpap:110824281 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0386 4 6076193 6078243 Lan19g0664 19 12505259 12507217 LSH
Lan19g0664 19 12505259 12507217 Lan16g0431 16 4246476 4248068 LSH
Lan12g1308 12 18774349 18789427 Lan19g0664 19 12505259 12507217 PCT
Lan1g0015 1 73067 74640 Lan19g0664 19 12505259 12507217 PCT
Lan19g0664 19 12505259 12507217 Lan12g1308 12 18774349 18789427 PCT
Lan19g0664 19 12505259 12507217 Lan1g0015 1 73067 74640 PCT