Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0653 ATGAAAGATGGTGGAGAACCACAACATTCCCCTAGCAATGATGACCACAAACCAGAAAATAAACAACAACTGAAAAAGGAGAACCATTCTGTAAGAGGCATAAGACCAAGAATTGGATTTTCTGATTCATTTTCAACCCTTGAGTTGGGAGGTTTAGATATTGAAGAGGGTCACCAATCTGAAAACTACTCTAGTCCTAGAAGTGTAGAATCTGGAACACTTTCTTCAAGGGCAAGTACTTCTGATTCTGAGGGTCAACCAGATTTGAGAGGCACCAATAATAATCAGTGGCGTCAAGGTTTCTTTAAGTTACTGAAGAAAGGTTCACAAATGCCATTTCATACCTTTCATCCACTTAAAAATGTTCCAAAGTTAGCTAGGAGAAAGAGCAAAAGGGTTAGAGAGGATTTGATTCCTTCTCTTAGTTCTCCTCTTAAGTCATCTTTGGACAGTGAGTTTTGCTGCTTTAAATCTTCTTGGAAAAATTTCACCCTCTCTGAGATTCAGGCTGCAACCAATGACTTCAGCCATGATAATTTGATTGGGGAGGGAGGCTATGCTGAGGTTTACTTAGGAAAATTGGAAGATGGAAACTTTGTTGCCTTTAAAAGGCTTACAAGAGGGAACCAAGAGGAAATGACAGCAGATTTCTTGTCAGAGCTGGGTATTATAGTGCATGTTGATCACCCAAATATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTTCTTGCTCTTCAGCTGTCTCCACATGGAAGCCTATCATCCATCCTCTATGGACCTAGAGAGAAACTGAACTGGAGCCTAAGGTATAAGATTGCTATGGGGACTGCTGAGGGCCTCCGCTATCTACATGAGGGATGTCAAAGAAGGATAATTCACAAAGATATCAAGGCTTCAAATATACTACTCTCACAGGATTTTGAGCCTCAGATATCTGATTTTGGACTTGCAAAGTGGTTGCCTGACCAATGGACACACCATACTGTCTCCAAAGTGGAAGGCACCTTTGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAGACTGATGTCTATGCTTATGGTGTACTATTATTGGAGCTCATTACTGGAAGACAAGCTTTGGATAGCTCACAGAAAAGTCTGGTGATGTGGGCCAAACCTTTGTTATCTGCAAACAACATGAAGGAACTTGTTGATCCGGTTTTGCCTGATGCTTATGATGAAGAACAGATGAAACTAGTAATCTTAACAGCTTCTCTGTGTATAGAGCAGGCTTCAATTCATCGACCGCACATGAGTGAGGTATTAAAGATATTAAGAGGTGAAGAAGAGAGCTTGAAGATGATAAAGGAACGCCAGAAATCAAAACTTCAAAGGACATATTCAGTAGAATTGAATGATGCAGAAGATTACAACTCAACCAAGTTTTTGAATGATAGGGATAGATACATGGAGACTATTCTAAGCACCCTTAATTCTATCAAAAAAGAAAGTAATGAAAGCTAG 1509 0.3989 MKDGGEPQHSPSNDDHKPENKQQLKKENHSVRGIRPRIGFSDSFSTLELGGLDIEEGHQSENYSSPRSVESGTLSSRASTSDSEGQPDLRGTNNNQWRQGFFKLLKKGSQMPFHTFHPLKNVPKLARRKSKRVREDLIPSLSSPLKSSLDSEFCCFKSSWKNFTLSEIQAATNDFSHDNLIGEGGYAEVYLGKLEDGNFVAFKRLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLALQLSPHGSLSSILYGPREKLNWSLRYKIAMGTAEGLRYLHEGCQRRIIHKDIKASNILLSQDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSANNMKELVDPVLPDAYDEEQMKLVILTASLCIEQASIHRPHMSEVLKILRGEEESLKMIKERQKSKLQRTYSVELNDAEDYNSTKFLNDRDRYMETILSTLNSIKKESNES* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0653 502 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 31 478 - -
Lan19g0653 502 MobiDBLite consensus disorder prediction 1 42 - -
Lan19g0653 502 MobiDBLite consensus disorder prediction 56 94 - -
Lan19g0653 502 ProSitePatterns Protein kinases ATP-binding region signature. 181 203 IPR017441 GO:0005524
Lan19g0653 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Lan19g0653 502 Gene3D Phosphorylase Kinase; domain 1 140 247 - -
Lan19g0653 502 SMART serkin_6 175 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0653 502 Pfam Protein tyrosine and serine/threonine kinase 178 438 IPR001245 GO:0004672|GO:0006468
Lan19g0653 502 Gene3D Transferase(Phosphotransferase) domain 1 252 469 - -
Lan19g0653 502 PANTHER OS08G0249100 PROTEIN 31 478 - -
Lan19g0653 502 ProSiteProfiles Protein kinase domain profile. 175 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0653 502 MobiDBLite consensus disorder prediction 1 33 - -
Lan19g0653 502 SUPERFAMILY Protein kinase-like (PK-like) 160 462 IPR011009 -
Lan19g0653 502 MobiDBLite consensus disorder prediction 58 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0653 Lan-Chr19 12354392 12359612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0653 146 444 Receptor kinase-like Gene Family AT1G53420 40.717 1.52e-70 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lan19g0653 PK_Tyr_Ser-Thr 7.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0653 - - lja:Lj6g3v1915960.1 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0369 4 5947590 5951290 Lan19g0653 19 12354392 12359612 LSH
Lan19g0653 19 12354392 12359612 Lan16g0441 16 4361983 4366534 LSH