Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0652 ATGGAACCTTCACCTCCACAAGCCATGGCCACCGAAGACCCTTCTTCCCCCATTTGGGACCTCTCCTACCTTCTCGACTTCAATCTCGACGAAACCGATCCCATTCCCTCCGTCGATCTTCCCGAAGAATTCCATCTCCCTCCTCCGCCTCACCAGATTCTAGCTCCAGATAACGATAGGGTTCGAAAACGTGACCCTAGGCTAACGTGCCCCAATTTTCTCGCCGGTCACGTGCCATGTGCTTGCCCCGAGCTCGATGCTATGCTCGATGATCAAGGTTTGCCTGAGAAGAAGAGGGTTCGGACCGCACGTGCGTCCGCTGTGGTTTTGCGGTGCCAGGTTCCCACGTGCGAGGCTGATATCTCTGAACTCAAGGGTTATCACAAGAGGCATAGGGTTTGTTTGCGTTGCGCGAATGCCGCTACCGTTCTTCTTCGTGGGGAGGCCAATAGATACTGTCAGCAGTGTGGGAAGTTTCACATACTACTGGATTTTGATGAAGGTAAACGCAGCTGTAGAAGAAAATTAGAGCGCCATAACAAACGAAGGCGTAGAAAGCCTGCAGATTCTGAAGCTGCTGCTGGCCATGAACTTCAACATGTCACAGAGAATGAGGATTTCAGTCATGACTGGGAAGCAGTAAAAGATTGTTCAAATTCGAGTGGTGAGATAAATGAAAAAGAAGCATCACTGGATCATGAAGATGAGCCACTTGCTGTTCTGTGCTCAGCTCCTGATGCCCAGAATATTAATAGTGACGATCCATCTCTTGTTGCTGGCAGTGAAACACAAGTGAATAGTAGGGGAAAAGATGTTCCCAAGATTTCTAATTCACCTCCATATGGTGGCAATAAGAGTGCTTATTCATCTAGGTGCCAAACAGGTCGGATATCTTTTAAACTTTATGATTGGAATCCTGCAGAATTTCCTAGAAGGCTACGGCACAAAATATTCCAATGGTTGGAGAGTATGCCCTTAGAGCTGGAGGGATATATCCGCCCTGGATGTACAATCCTCACAATTTTTATTTCAATGCCAAAAACTATGTGGATAAATTTACTTGAAGACCCTCTGCACTATATATGTGATCTTGTTGCTCCAGGGAAGATGCTATCTGGAAGAGGTAGTGCACTAATTCATTTGGATGACATGATCTTCCGTGTAGTGAAAGATGGAACTTCTGTGATGAAAGTCGAGGTAAACATGCAGGCACCAAGGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGAAAACCTATGGAGTTTGTTGCTTGTGGAAGCAACTTGCTGCAGCCAAAGTTTCGGCTTCTTGTATCTTTTTCTGGGAAGTATCAGAAGTTTGAGTCTTGTGTTCGATCTCCCCATAACTGGACTAGAGATAATGTTTCTTGTGCTTTCGACAATCAGTTATACAAGATACATGTCCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAGTCTGGTTTATCAAACTTTATTCCTGTACTCATTGGTGATAAAGAAATTTGCATTGAAATGAAGAGATTGCAGCAAGAGTTAGATGTGTCTCTCCTTTCTGAACAATTCCAGTCTGTGTCTGTTGGTTCTGTCTGTAGCTCATGTCAGGCCTTTGCACTTAGACATACATCCTCATCATCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGATCCCACTTCAGAAAATTTTGATCGAGTGATGACTGCTTCACAAATTCAAAGATATTGTTATTTGTTAGGTTTTCTAATATGCAATGATTCCACAATCATTTTAGGAAAAATATTACCAAATTTAACGATCTTGACAGAAATCATGAGATCAAATGTTGTGACTAATAGGATGAGTGATATCGACATGACAGAACTGCTGAAATGCATGCATAGTGCTAGAGATGTAATTTCTCAGAAACTTCACAAAGGTGGGGGTATAACTGTGGACTCTGAAATGGAAGGCGTTAAAGTTGCTCAGAGCTGCTTCCAAGATAACATGCCATCAGTTGCAATTAACAGTCAGGGTCTCATGTCAATAGCAGATGCAAGGTTGGGAGTATCAAGAAGTTCAACTTATAATGACAGAAGTGAAAGGGTAGCACTTTTAAAGAGGGAAATTATAATGAACATCGAAGAGTTGCCTAGAACGTCTTGCCATCGATATCTTCCGAGGGGGTTCTCGAGCTCTCAGCCGGCTATGTTTGTGATTGCTTCAATTGCTGTTTGTTTTGGGTTATGTGTAGCCGTCCTTCATCATGGGAGGGTTAGTGATTTTGCATTATCAATTAGAAGGTGCTTGTTTAACAATTCCTAG 2331 0.4324 MEPSPPQAMATEDPSSPIWDLSYLLDFNLDETDPIPSVDLPEEFHLPPPPHQILAPDNDRVRKRDPRLTCPNFLAGHVPCACPELDAMLDDQGLPEKKRVRTARASAVVLRCQVPTCEADISELKGYHKRHRVCLRCANAATVLLRGEANRYCQQCGKFHILLDFDEGKRSCRRKLERHNKRRRRKPADSEAAAGHELQHVTENEDFSHDWEAVKDCSNSSGEINEKEASLDHEDEPLAVLCSAPDAQNINSDDPSLVAGSETQVNSRGKDVPKISNSPPYGGNKSAYSSRCQTGRISFKLYDWNPAEFPRRLRHKIFQWLESMPLELEGYIRPGCTILTIFISMPKTMWINLLEDPLHYICDLVAPGKMLSGRGSALIHLDDMIFRVVKDGTSVMKVEVNMQAPRLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYQKFESCVRSPHNWTRDNVSCAFDNQLYKIHVPHTEESLFGPAFIEVENESGLSNFIPVLIGDKEICIEMKRLQQELDVSLLSEQFQSVSVGSVCSSCQAFALRHTSSSSDLLVDIAWLLKDPTSENFDRVMTASQIQRYCYLLGFLICNDSTIILGKILPNLTILTEIMRSNVVTNRMSDIDMTELLKCMHSARDVISQKLHKGGGITVDSEMEGVKVAQSCFQDNMPSVAINSQGLMSIADARLGVSRSSTYNDRSERVALLKREIIMNIEELPRTSCHRYLPRGFSSSQPAMFVIASIAVCFGLCVAVLHHGRVSDFALSIRRCLFNNS* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0652 776 ProSiteProfiles Zinc finger SBP-type profile. 109 186 IPR004333 GO:0003677
Lan19g0652 776 Pfam SBP domain 112 186 IPR004333 GO:0003677
Lan19g0652 776 MobiDBLite consensus disorder prediction 251 289 - -
Lan19g0652 776 Gene3D - 108 173 IPR036893 GO:0003677|GO:0005634
Lan19g0652 776 MobiDBLite consensus disorder prediction 177 205 - -
Lan19g0652 776 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 773 IPR044817 GO:0003677
Lan19g0652 776 MobiDBLite consensus disorder prediction 184 205 - -
Lan19g0652 776 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 13 773 - -
Lan19g0652 776 SUPERFAMILY SBT domain 110 189 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0652 Lan-Chr19 12345667 12352319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0652 1 769 SBP-box Gene Family AT5G18830 45.579 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan19g0652 SBP 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0652 - - aprc:113863838 1076.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0652 19 12345667 12352319 Lan16g0444 16 4385991 4393196 LSH