Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0642 ATGGGGTGTGTGTTTGGGAAGCAGTCATCAGTGGGGAAGAACACTGCGGCGGCGGCGGAGGAGGCTGCAGGGGAGAGGGAGTGGGAGAGGAGGAGGGAGGAAAAGAGAGAGGAAGTGGAAGAAGCAAAATCTGAAGTTGTTGAGGGTGAGATTGAGAATGGTGGTGGAAATCAGAAGGAGGAGGGTGGTGGTGGAGAGGAGAAGAGGACAAGGTCTTCAAGGAGGCGATCTTCGAAGCCGAATCCGCGGCTGAGCAATCCACCTGGTCATGTTCATGGTGAGCAGGTGGCAGCAGGGTGGCCCTCTTGGCTCTCCAAGGTTGCTGGGGAAGCTATCAATGGATTGATCCCTAGAAGAGCTGATTCCTTTGAGAAGCTTGATAAGATTGGGCAAGGTACATACAGCAATGTTTATAAAGCAAGGGATACTCTGACAGGAAAAATTGTTGCCCTAAAGAAGGTCCGTTTTGACAATTTAGAGCCCGAGAGTGTGAAATTCATGGCCAGGGAGATTCTGATTCTGCGTCGTTTGGATCATCCAAATGTTGTCAAACTGGAAGGCTTGGTGACTTCTAGAATGTCATGCAGTTTGTATCTTGTGTTTGAATACATGGTGCATGATTTGGCTGGACTTGCTACAAACCCAGCTATTAAGTTCACGGAATCTCAGGTTAAATGTTACATGCATCAGCTATTTTCTGGGCTGGAACATTGTCACAACCGCCATGTGCTGCATCGTGATATAAAAGGGTCAAACCTCCTTATTGACAATGAAGGAGTTCTTAAGATTGCCGATTTTGGATTAGCTTCTTTCTTTGATCCTAATCACAAGCACCCTATGACTAGTAGAGTCGTGACTTTATGGTATCGACCTCCAGAACTTCTTCTTGGAGCCACTGAGTATGGTGTAGGAGTGGATCTCTGGAGTGCTGGCTGCATTCTTGCAGAATTATTGGCTGGAAGACCAATTATGCCTGGTCGAACGGAGGTGGAGCAGCTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATACTGGAAAAAGTCAAAGTTACCTCATGCTACCATCTTTAAGCCGCAACAGTCGTACAAGCGGAGCATATCAGAGATATTTAAAGATTTTCCGCCATCATCCCTGCCACTAATCGAGACCCTTCTTTCAATTGATCCAGCTGAACGTCAGACTGCCACTGCTGCATTGCATAGTGAATTCTTTACAACTAAACCTTATGCTTGTGAACCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATGCAAAGCTACGGGATGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAAAGCTAATGCTGATGGTGTCAAGAAGTCTCGTCCACGTGACCGTGACCGAGTCGGGAGAGGAATTCCTGTTCCAGAGGCCAATGCTGAACTGCAAGTGAACATTGACAGACGACGAATTATATCGCATGCGAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCCCACCAAGATGGAACTCTAGGCTATTCTTTAGGTTCTTCACATCACATGGATCCAGGTTTTGACCCTCCTGATGTTCCATTTAGTTCCACAAACTTGTCACAACCTAAAGCAAATATCCAAACCTGGTCCGGGCCATTGGTTGAACCTGCTCCTGTGGGTGCACCAAGGAGAAAGAAGAAACATGGAAGGTGA 1692 0.4675 MGCVFGKQSSVGKNTAAAAEEAAGEREWERRREEKREEVEEAKSEVVEGEIENGGGNQKEEGGGGEEKRTRSSRRRSSKPNPRLSNPPGHVHGEQVAAGWPSWLSKVAGEAINGLIPRRADSFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMVHDLAGLATNPAIKFTESQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNEGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATEYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRSISEIFKDFPPSSLPLIETLLSIDPAERQTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANADGVKKSRPRDRDRVGRGIPVPEANAELQVNIDRRRIISHANAKSKSEKFPPPHQDGTLGYSLGSSHHMDPGFDPPDVPFSSTNLSQPKANIQTWSGPLVEPAPVGAPRRKKKHGR* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0642 563 CDD STKc_CDK9_like 123 407 - -
Lan19g0642 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Lan19g0642 563 MobiDBLite consensus disorder prediction 1 95 - -
Lan19g0642 563 ProSiteProfiles Protein kinase domain profile. 123 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0642 563 ProSitePatterns Protein kinases ATP-binding region signature. 129 152 IPR017441 GO:0005524
Lan19g0642 563 SUPERFAMILY Protein kinase-like (PK-like) 118 412 IPR011009 -
Lan19g0642 563 MobiDBLite consensus disorder prediction 441 469 - -
Lan19g0642 563 PANTHER CELL DIVISION PROTEIN KINASE 61 562 - -
Lan19g0642 563 PANTHER CYCLIN-DEPENDENT KINASE 61 562 - -
Lan19g0642 563 Gene3D Transferase(Phosphotransferase) domain 1 206 446 - -
Lan19g0642 563 Gene3D Phosphorylase Kinase; domain 1 112 205 - -
Lan19g0642 563 SMART serkin_6 123 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0642 563 MobiDBLite consensus disorder prediction 20 48 - -
Lan19g0642 563 Pfam Protein kinase domain 123 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0642 563 MobiDBLite consensus disorder prediction 441 465 - -
Lan19g0642 563 MobiDBLite consensus disorder prediction 526 541 - -
Lan19g0642 563 MobiDBLite consensus disorder prediction 489 563 - -
Lan19g0642 563 Coils Coil 25 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0642 Lan-Chr19 12129501 12135772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0642 118 445 Core Cell Cycle Gene Families AT5G10270 51.744 4.42e-117 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lan19g0642 Pkinase 9.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0642 K08819 - gmx:100779413 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0362 4 5877220 5883922 Lan19g0642 19 12129501 12135772 LSH
Lan19g0642 19 12129501 12135772 Lan16g0455 16 4486363 4491527 LSH