Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0618 ATGGCTGGTTCTGTAGCAGAAAGTGGCCAGGATAAGAAGAAGAGATTTGCCCTTCTCGGCGTCTCTTCGATCCTTCTTGTTGCTATGGTTGGTGCGGTGGCCATTGGTTTAACCCGAAGTGGAAGTCCAGAACATGGTGATACCGAGATCTCGAGCTCTCAGAAGAATGCAGAGGTGCTCTGCCAATCAACACAATACAAAGATACTTGCATCAAAAGCCTGGATAAGGCGTCGAATACTACCGATGTCAAAGAGCTTGTGAAAATGGCCTTCAATTCCACAGCTGAGGAGTTGTTAAGCAAAATTAACAACTCCACACTTTTGAAAGAGTTGGCTAAGGATAACATGACCAAACAGGCTTTGGATATATGCAAGGAAGTGTTTGATTACGCAATTGATGACATTCAGAAATCAATTAACTCATTGGACAATTTTGAAGTCAGCAAGCTAAGCCAATATGCCTATGAACTTAAGGTTTGGCTTGCAGGTACACTCTCACACCAACAAACATGTTTGGATGGATTCGAGAACTCGAAAACAAAAGGTGCCGAGACAATGAAAAAGGCCTTAAACACATCAATTGAGATGAGTAGCAATGCTGTTGATCTCATCAATGCTGCATCTGAACTCCTCAAGGATTTCAACTTGAACTCCTCTGAGCTTAGCACAATTGCTAGCAGGAGGCTTCTCTCCGATGAAGAAGAACAACAGCAACAACAACAAAAACAACAACAGCAACAACAACAACAACAAGAACCACTTGTTGATGGTTTTCCTTCATGGGCGAGTGAAGGACAAAGGAGTCTTCTTCAGGCTGCACCTGGTGGTGGAGGCGGAATTAAGGCTAACGCGGTCGTGGCTCAAGATGGGAGTGGACAGTTCAAAACCCTCACTGATGCTCTCAACACTGTTCCTAAGAAGAATGCTTTGCCTTTTGTGATTCATGTGAAGGAGGGTGTGTACAAGGAGTATGTTTCTGTGCTCAAGCATATGACCAATGTCACAATCATTGGAGATGGTCCTACAAAGACCATATTCTCTGGCGGCAAAAATTACAAGGATGGTGTCCAAACTTACAAGACTGCAACATTTGGTGTTAATGCTGCTATGTTCACTGCCAAGGATATCGGGTTTGAGAACACAGCAGGATCAGAGAGGCACCAAGCTGTGGCACTCAGGGTAACAGCAGACCAAGCAGTGTTCCACAACTGCAAAATGGACGGGTTCCAAGACACTCTCTACGTGCAATCGAAGCGCCAATTCTACCGTGACTGCACCATCTCAGGCACAATTGACTTCATATTCGGCGACGCGGTCGCAGTGTTCCAGAACTGCAAACTAGTGGTAAGAAAGCCCTTAGACAACCAACAATGTATGGTTACAGCAGGGGGAAGGTCCAAACTTGAAAGCCCAAGTGGCCTAATATTCCAAAACTGTCACTTCACAAGTGAGCCAGAAGTAGCTACCTTGAACCCAAAGATATCATACTTGGGAAGGCCATGGAGAATTTACTCTAGGGTAGTAATCATGGATTCTACAATTGATGACATTTTTGTTCCACAAGGGTATATGCCATGGATGGGAAGTGCATTTACTGATACATGTACCTATTATGAGTACAATAACAAAGGTGGTGGTGGTAACACTGCATCAAGAGTGAAATGGCCTGGTGTTAAGACCATAACATCTGCTGAAGCTGCTGTTTTCTATCCAGGGAAATTCTTTGAGATTGCTAACTCAACTCAACGTGATTCTTGGATTGTTAGCTCTGGTGTGCCATATTCACTAGGCCCTATTCCAAGTGGAGGGGTAAAGCCGATATGA 1824 0.443 MAGSVAESGQDKKKRFALLGVSSILLVAMVGAVAIGLTRSGSPEHGDTEISSSQKNAEVLCQSTQYKDTCIKSLDKASNTTDVKELVKMAFNSTAEELLSKINNSTLLKELAKDNMTKQALDICKEVFDYAIDDIQKSINSLDNFEVSKLSQYAYELKVWLAGTLSHQQTCLDGFENSKTKGAETMKKALNTSIEMSSNAVDLINAASELLKDFNLNSSELSTIASRRLLSDEEEQQQQQQKQQQQQQQQQEPLVDGFPSWASEGQRSLLQAAPGGGGGIKANAVVAQDGSGQFKTLTDALNTVPKKNALPFVIHVKEGVYKEYVSVLKHMTNVTIIGDGPTKTIFSGGKNYKDGVQTYKTATFGVNAAMFTAKDIGFENTAGSERHQAVALRVTADQAVFHNCKMDGFQDTLYVQSKRQFYRDCTISGTIDFIFGDAVAVFQNCKLVVRKPLDNQQCMVTAGGRSKLESPSGLIFQNCHFTSEPEVATLNPKISYLGRPWRIYSRVVIMDSTIDDIFVPQGYMPWMGSAFTDTCTYYEYNNKGGGGNTASRVKWPGVKTITSAEAAVFYPGKFFEIANSTQRDSWIVSSGVPYSLGPIPSGGVKPI* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0618 607 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 207 IPR035513 -
Lan19g0618 607 Pfam Plant invertase/pectin methylesterase inhibitor 60 202 IPR006501 GO:0004857
Lan19g0618 607 MobiDBLite consensus disorder prediction 236 256 - -
Lan19g0618 607 SUPERFAMILY Pectin lyase-like 280 596 IPR011050 -
Lan19g0618 607 Pfam Pectinesterase 283 575 IPR000070 GO:0030599|GO:0042545
Lan19g0618 607 CDD PMEI-like_3 60 208 - -
Lan19g0618 607 Coils Coil 227 252 - -
Lan19g0618 607 PANTHER PECTINESTERASE 8 601 - -
Lan19g0618 607 ProSitePatterns Pectinesterase signature 2. 427 436 IPR033131 -
Lan19g0618 607 TIGRFAM PME_inhib: pectinesterase inhibitor domain 51 205 IPR006501 GO:0004857
Lan19g0618 607 PANTHER PECTINESTERASE 8 601 - -
Lan19g0618 607 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 206 IPR035513 -
Lan19g0618 607 Gene3D - 280 599 IPR012334 -
Lan19g0618 607 SMART PMEI_2 52 203 IPR006501 GO:0004857
Lan19g0618 607 MobiDBLite consensus disorder prediction 229 258 - -
Lan19g0618 607 ProSitePatterns Pectinesterase signature 1. 308 327 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0618 Lan-Chr19 11588187 11591296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0618 12 597 Carbohydrate Esterase AT3G05610 44.746 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0618 K01051 - gmx:100784682 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0873 12 15806746 15809452 Lan19g0618 19 11588187 11591296 PCT
Lan19g0618 19 11588187 11591296 Lan12g0873 12 15806746 15809452 PCT