LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan19g0605	ATGTATAACATCGTGAATCTCTTGTTCTTTTCTATTGTTTTGTTCAATGCTATTCGTGCATCTAGTCAAGATTCATCATCACCATCATTATTGATCTTGGGTTGTGGCTTAGACAAAGGTAGCGAAAAAGATGTTGATGGAAGAACATGGGGTCCAGATGACAAGTTCCTACAACCAGGTGGAAATTCCATAAAATCCAAAGCCTCTTTTCAAGACCCTTCTCTTTTGGATGTGGTTCCATACATGTCAGCAAGAGTTTTCACATCTGAAACATCATACAAATTCCCTGTCCAACCGGATAAGCGTTATTGGTTAAGGCTTCATTTTTACCCTTCTGTTTATGGCAGTTACAACCCTTCAGAATCATATTTCTCAGTCATAGCAAATGGTGGTGTTACCCTTCTCTCAAACTTTAGTGCCTCAATCACTTGTCAGGCCCTCTCACAAGCTTACCTTGATAGAGAGTACTCCCTTGCTCCATTGAACACAGATGCTTTGACTCTCACCTTTAAGCCTAATGACAAGTCTTTTGGATTTATCAATGGGATTCAACTGATTGAAATGCCTGAGTTATTTGATTCTGTTGCTGCATTGGTTGGGTATTCTGGCCAAACTGTTGAAGTCAAAAGTTTGCATTTGCAAACCATGTTTAGGCTCAATGTTGGTGGACAATACATATCTCCAAAACAAGATTCTGGTCTTTCTAGGATGTGGTATGATGACACACCTTACATATATGGTGCAGCCACTGGTGTTACCAACCAAGCTGAAAAGGATGTGAAAATCAACTACCAAAACATGTCATCATACGTTGCTCCTACTAATGTCTATTCCACATCAAGATCAATGGGGAATGATAAGAATATGAATATGGGGTATAATCTCACATGGATTTTCCAAGTTGATCCAAATTCTATGTACCTTGCAAGGTTGCATTTTTGTGATTACTATTATTCCAAAGTCAATGAGATTGTTTTCAATATCTTCCTTAACAACCAAACAGCACAAACTCAAGCTGATGTGATAGGATGGACGGGAGGTAAAGGTGTTCCAACTTACAAAGACTATGTGATATATGTGCAAGATGATGCAGGTGAAGATCAACTTTGGCTTGCATTGCATCCAGCACTGGATTCGAAGCCCGAGTTTTATGATGCATTGCTCAATGGAGTGGAGATATTCAAGGTCAACGACACAAACTTGTCTGGCCCTAATCCTCAGCCTTCAGACATGCTCATGAAGGCTGAAGAAGAGGAAAGAAAATTTGAAACCCACAAAGGGTATAATAAGAATGTTGTTGGTAGTGCTGCTGGAGGTGCTGCTGGTTTTGCCTTAATGGCCGCAATAGTATGTGTTGCTGTGTACAGAAAGAAGAGAGTTCCAGGATCAGACAATCATACAAGCTGGTTGCCAATCTATGGAACCTCACAAACAACCGGTACGAAATCCACCATGTCTGGGATGAGCACTAATAGTGCCAACTTAACTGCCATGGCTCAAGGTCTTTGCAGATACTTCTCCTTACAAGATATTAAGCAAGCAACTAACAATTTTGATGAGCCTAATGTTATTGGAGTTGGAGGATTTGGAAAGGTTTACAAGGGTGTTATTGATAATGGGGTTAAAGTGGCAGTCAAAAGGTCTAATCCACAATCAGAACAAGGAGTTAATGAATTCCAGACTGAGATTGAGATGCTTTCCAAGTTGAGACACAAGCATTTGGTGTCATTGATTGGATTTTGTGAGGAAGATGATGAGATGTGCTTGGTTTATGACTACATGGAACACGGCACCTTTAGAGAACATTTGTATAAGGGTAACAAACCTTTGTCTACTCTATCATGGAAGGAAAGGTTAGAGATATGCATTGGAGCTGCAAGAGGGCTTCACTACCTTCACACTGGGGCTAAGTACACCATCATCCATAGAGATGTCAAAACAACAAACATTCTGATTGATGAGAACTGGTCTGCTAAGGTTTCAGATTTCGGGTTGTCAAAAACCGGTCCAAACATGAACCAAGGTCATGTTAGTACTGTGGTGAAAGGGAGTTTTGGATATTTGGATCCTGAGTATTTCAGAAGGCAACAATTGACTGAGAAATCTGATGTATACTCATTTGGTGTGGTCTTGTTTGAAGCACTGTGTGCAAGGCCTGCTTTGAATCCTAGTCTTCCAAAGGAACAGGTTAGTCTTGCAGACTGGGCATTGATATGCAAAAGAAAAGGAACATTGGAGGATATTGTTGACCCTTATATCAAAGGAAAGATCAATCCTGAAAGCTTGAAGAAGTTTGCAGACACTGCAGAGAAATGCTTGTCTGATCACGGAATTGATCGTCCTTCCATGAATGATTTATTGTGGAATCTTGAGTTTGCTCTGAACCTGCAAGAGAATCCTGATGGTTCAACTAAGTCTGCGACACGTGTTATTGATGAAAGTGAGTTTGAAGATATAAGCTTGGGAAATAATGACATGGCTAACCATTATAAGAACTTGAGCCTTGGAAGTGAGCATGAACTTAGCAGCAACAAGGAAGATTCAAGTGAGAATTCCACTGCTGTATTCTCACAAATTGTCAATCCATCAGGGAGATAA	2598	0.4026	MYNIVNLLFFSIVLFNAIRASSQDSSSPSLLILGCGLDKGSEKDVDGRTWGPDDKFLQPGGNSIKSKASFQDPSLLDVVPYMSARVFTSETSYKFPVQPDKRYWLRLHFYPSVYGSYNPSESYFSVIANGGVTLLSNFSASITCQALSQAYLDREYSLAPLNTDALTLTFKPNDKSFGFINGIQLIEMPELFDSVAALVGYSGQTVEVKSLHLQTMFRLNVGGQYISPKQDSGLSRMWYDDTPYIYGAATGVTNQAEKDVKINYQNMSSYVAPTNVYSTSRSMGNDKNMNMGYNLTWIFQVDPNSMYLARLHFCDYYYSKVNEIVFNIFLNNQTAQTQADVIGWTGGKGVPTYKDYVIYVQDDAGEDQLWLALHPALDSKPEFYDALLNGVEIFKVNDTNLSGPNPQPSDMLMKAEEEERKFETHKGYNKNVVGSAAGGAAGFALMAAIVCVAVYRKKRVPGSDNHTSWLPIYGTSQTTGTKSTMSGMSTNSANLTAMAQGLCRYFSLQDIKQATNNFDEPNVIGVGGFGKVYKGVIDNGVKVAVKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEDDEMCLVYDYMEHGTFREHLYKGNKPLSTLSWKERLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILIDENWSAKVSDFGLSKTGPNMNQGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPALNPSLPKEQVSLADWALICKRKGTLEDIVDPYIKGKINPESLKKFADTAEKCLSDHGIDRPSMNDLLWNLEFALNLQENPDGSTKSATRVIDESEFEDISLGNNDMANHYKNLSLGSEHELSSNKEDSSENSTAVFSQIVNPSGR*	866

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan19g0605	865	CDD	STKc_IRAK	524	791	-	-
	Lan19g0605	865	PANTHER	MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN	21	847	-	-
	Lan19g0605	865	MobiDBLite	consensus disorder prediction	847	865	-	-
	Lan19g0605	865	PANTHER	OS07G0166700 PROTEIN	21	847	IPR045272	GO:0004714\|GO:0006468
	Lan19g0605	865	Gene3D	Transferase(Phosphotransferase) domain 1	594	815	-	-
	Lan19g0605	865	Pfam	Malectin-like domain	34	396	IPR024788	-
	Lan19g0605	865	ProSiteProfiles	Protein kinase domain profile.	518	793	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan19g0605	865	Gene3D	-	211	397	-	-
	Lan19g0605	865	Gene3D	-	32	189	-	-
	Lan19g0605	865	MobiDBLite	consensus disorder prediction	837	865	-	-
	Lan19g0605	865	ProSitePatterns	Protein kinases ATP-binding region signature.	524	546	IPR017441	GO:0005524
	Lan19g0605	865	SUPERFAMILY	Protein kinase-like (PK-like)	495	793	IPR011009	-
	Lan19g0605	865	Pfam	Protein tyrosine and serine/threonine kinase	523	786	IPR001245	GO:0004672\|GO:0006468
	Lan19g0605	865	Gene3D	Phosphorylase Kinase; domain 1	477	593	-	-
	Lan19g0605	865	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	640	652	IPR008271	GO:0004672\|GO:0006468
	Lan19g0605	865	SMART	serkin_6	518	793	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan19g0605	Lan-Chr19	11334044	11336915	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan19g0605	17	865	Receptor kinase-like Gene Family	AT3G51550	52.144	0.0	847

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Lan19g0605		Malectin_like	3.3e-37	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan19g0605	-		-	gmx:102659961	1340.48

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan4g0840	4	10357390	10363103	Lan19g0605	19	11334044	11336915	LSH
	Lan19g0605	19	11334044	11336915	Lan16g1114	16	18243454	18248964	LSH
	Lan19g0605	19	11334044	11336915	Lan8g0279	8	4850875	4857567	PCT
	Lan19g0605	19	11334044	11336915	Lan20g0697	20	5673686	5680664	PCT
	Lan19g0605	19	11334044	11336915	Lan8g0272	8	4789822	4793167	PCT
	Lan19g0605	19	11334044	11336915	Lan20g0711	20	5792739	5796136	PCT
	Lan8g0279	8	4850875	4857567	Lan19g0605	19	11334044	11336915	PCT
	Lan20g0697	20	5673686	5680664	Lan19g0605	19	11334044	11336915	PCT
	Lan8g0272	8	4789822	4793167	Lan19g0605	19	11334044	11336915	PCT
	Lan20g0711	20	5792739	5796136	Lan19g0605	19	11334044	11336915	PCT