Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0600 ATGGAAAGATTATTGTTGTCGTTGGTTTTGGTTGTGTTGGTTTCTTCTATTGTGCTTTCTGTTTCTGCAATTGATGTTGAATTTGGTCACTGTAACTGTGATGAGGAAGGAATTTGGAGCATTCAGAGTATTCTTGTTTGTCAAAAAGTCAGTGACCTTTTCATTGCAATCGCTTATTTTTCTATACCAATTGAGCTACTTTACTTTGTTAGCTACTCCAATGTTCCATTCAAATTGGTCTTCCTTCAATTCATAGCCTTCATTGTTCTCTGTGGTTTAACTCATTTACTCAATGCTTATACATATTATGGCCCTCACTCCTTCCAACTATTGCTCTCTCTCACTGTTGCAAAGTTCCTTACTGCTCTTGTTTCATGTGCAACTGCTATCACCTTTCCTACTTTGATCCCCCTTCTCCTCAAAGTCAAAGTGAGGGAGTTCTTCTTGAGGCAGAATGTTTTCGAATTAGGCCAAGAGGTTGGGATGATGAAGAAACAAAAGGAAACCAGTTGGCATGTTCGGATGCTAACTCGTGAGATTAGAAAGTCACTGGATAAGCATACAATATTGTATACAATGCTTGTTGAGCTTTCCAAGTCGTTGGATTTGCATAATTGTGCAGTTTGGATGCCGGACGAGGAAAGGCATGTGATGCATTTGACTCACAAGTTGAAGCCAGGGTCAGGAAATAAGTTCCTTAGTCCTATTCCGATAAACGAACAAGAAGTTTTAGAGATAAGAAAAAGTAAAGGGGCTTGGATTTTGAGGCCTGATTCTGCATTAGGAGCTGCAAGCTATGGTGGTGGTGGTGGAACTGAGGTGTATGGTAATGTTGCCGCTATTCGTATGCCAATACTTCATGTTTCGAATTTCAAAGGAGGGACACCAGAGTTTGTTGAGACATCTTATGCTATATTGGTTTTGGTGCTACCGAATTCAAAATCAAGGGTTTGGACCTCACATGAGATGGAGATAGTGGAAGTAGTTGCTGACCAGGTTGCTGTAGCATTGTCTCATGCGTCTGTTCTTGAAGAGTCTCAGCTAATGAGGCAGAAACTCGCTGACCAGAACCGAGCCTTGGAACAAGCTCAAAAGAATGCGATGATGGCGAGCCAGGCAAGGAGCTCGTTTCAGAGAGTGATGAATCAAGGAATGCGGCGACCAATGCATTCGATCCTCGGCTTGCTTTCAATCTTCAAAGAGGATAATATAAAACCTGAACAGAAGATTATCATTGACACGATGTTGAAAGTTAGCACTGCACTCTCGAGTTTGATTAACGATATGATGGAGATTTCGGAGAACGACAAGGGAAGCTTCCGGTTAGAGATGAAACCTTTCCATCTCCATTCCATGATGAGGGAAGCTTCTTGCATTGCCAAGTGTTTGTCTGTATATAAGGGCTTCAATCTTGAAATCGATGTGTCAAAGTCTTTGCCTAATCTGGTCTTAGGCGATGAGGCCAGGTCTTTTCAAGTGATTTTGCATATGATTGGATATTTATTAAACATATATGATAGAGGAACTCTCATTTTTCGGGTTTTTCTTGAAAGTGGTAGTATTGGAGATAATAAGGATGATAAAAGTATTGGAATTTGGAGGTCAAGCATGCAAAATGATTATGCATATATAAAATTTAATTTTGAGATAACTGGTATTAGGTCTCAGCTAGATGAATCAATTTCAACAAGGCGTCATGGTGGTAGGAGGCATAACGATAATGAACCTAGGGAGGGATTGAGTTTTAGCATGTGCAAAAAGCTTGTTCAGATGATGCAAGGTAATATTTGGATAACAACAAACTCTCTAGGATTACCACAAGGCATGACACTTTTTCTCAAGTTTCAGACAGGACCATCACTCGGAAGATCAATTCTTACACCTAAACAATTTTCACACACACAATTTAGAAGCTTCAAGGTTGTGTTAGCTGATGATGATGGTGTAAACAGGACAGTGACCAAGAAGCTTCTTGAGAAGCTTGGTTTCCAAGTAACTGCGGTTTCATCAGGGTTTGAGTGCCTTAGTGCTATAAGCGCCTCTGGTAACTCGTTCAAGATCATTGTGTTGGATCTTCACATGCCTGAAATGGACAGTTTTGAAGTTGTGAGGAGGATCCGGAAGTTCCACAGCCATAATTGGCCTTTGATTATTGCTCTTACGGCAAGTGCAGAAAAACATGTGAAGGAGAGATGTCTAGAGGTTGGGATGCAAGGACTGATGCGAAAGCCTATCCTTCTTCATGAGTTAGCAGATGAACTTAGAACAGTTCTGCAATGCGAAGGTGAAAATTTGTGA 2298 0.4073 MERLLLSLVLVVLVSSIVLSVSAIDVEFGHCNCDEEGIWSIQSILVCQKVSDLFIAIAYFSIPIELLYFVSYSNVPFKLVFLQFIAFIVLCGLTHLLNAYTYYGPHSFQLLLSLTVAKFLTALVSCATAITFPTLIPLLLKVKVREFFLRQNVFELGQEVGMMKKQKETSWHVRMLTREIRKSLDKHTILYTMLVELSKSLDLHNCAVWMPDEERHVMHLTHKLKPGSGNKFLSPIPINEQEVLEIRKSKGAWILRPDSALGAASYGGGGGTEVYGNVAAIRMPILHVSNFKGGTPEFVETSYAILVLVLPNSKSRVWTSHEMEIVEVVADQVAVALSHASVLEESQLMRQKLADQNRALEQAQKNAMMASQARSSFQRVMNQGMRRPMHSILGLLSIFKEDNIKPEQKIIIDTMLKVSTALSSLINDMMEISENDKGSFRLEMKPFHLHSMMREASCIAKCLSVYKGFNLEIDVSKSLPNLVLGDEARSFQVILHMIGYLLNIYDRGTLIFRVFLESGSIGDNKDDKSIGIWRSSMQNDYAYIKFNFEITGIRSQLDESISTRRHGGRRHNDNEPREGLSFSMCKKLVQMMQGNIWITTNSLGLPQGMTLFLKFQTGPSLGRSILTPKQFSHTQFRSFKVVLADDDGVNRTVTKKLLEKLGFQVTAVSSGFECLSAISASGNSFKIIVLDLHMPEMDSFEVVRRIRKFHSHNWPLIIALTASAEKHVKERCLEVGMQGLMRKPILLHELADELRTVLQCEGENL* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0600 765 Coils Coil 343 373 - -
Lan19g0600 765 ProSiteProfiles Histidine kinase domain profile. 380 619 IPR005467 -
Lan19g0600 765 PANTHER TWO-COMPONENT HISTIDINE KINASE 7 758 - -
Lan19g0600 765 Gene3D - 162 338 IPR029016 -
Lan19g0600 765 SUPERFAMILY GAF domain-like 188 340 - -
Lan19g0600 765 ProSiteProfiles Response regulatory domain profile. 640 758 IPR001789 GO:0000160
Lan19g0600 765 Gene3D - 339 436 - -
Lan19g0600 765 PANTHER ETHYLENE RECEPTOR 7 758 - -
Lan19g0600 765 Pfam GAF domain 187 337 IPR003018 GO:0005515
Lan19g0600 765 Gene3D - 437 618 IPR036890 -
Lan19g0600 765 CDD REC_ETR-like 640 754 - -
Lan19g0600 765 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 358 438 IPR036097 GO:0000155|GO:0007165
Lan19g0600 765 SMART HisKA_10 373 438 IPR003661 GO:0000155|GO:0007165
Lan19g0600 765 CDD HATPase_ETR2_ERS2-EIN4-like 479 613 - -
Lan19g0600 765 Gene3D - 640 763 - -
Lan19g0600 765 PIRSF Ethylen_sen_hybr_HK 4 764 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Lan19g0600 765 SUPERFAMILY CheY-like 636 759 IPR011006 -
Lan19g0600 765 Pfam Response regulator receiver domain 641 754 IPR001789 GO:0000160
Lan19g0600 765 SMART REC_2 639 754 IPR001789 GO:0000160
Lan19g0600 765 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 442 605 IPR036890 -
Lan19g0600 765 SMART gaf_1 185 347 IPR003018 GO:0005515
Lan19g0600 765 CDD HisKA 371 433 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0600 Lan-Chr19 11281516 11284986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0600 25 763 Miscellaneous Gene Families AT3G04580 61.096 0.0 906
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan19g0600 GAF 4.1e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0600 K14509 - gmx:100805023 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0600 19 11281516 11284986 Lan16g1274 16 20697364 20700540 LSH