Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0590 ATGCTCATAGGCACAGTTTTATTATCAATTGTCATACTTTGGTTCCTTGCACTTCACATCTATGAAAGGTTTGTTCTAAGACACCAAGCTCGCCGTGGAGCTTCCATTAACCATCTCACCCTCACCTTGACACACGCTCATGACCGAACTGAACCGCGAAACACAGGACTCGACCCTTTACTCATCAAGGCTCTTCCTATGTTCATCTTCAAGAAAAAAGGATTTCACCAACAACAAAGAGAAGATCATGCTGATAATATTGACGATTGTGCTGTGTGCTTGAGTGCTTTTGATGAGGAAGAAATGGTGAGGTTATTACCGAATTGTAAGCACATTTTCCATGTTGGTTGCATAGATAAATGGTTGGCTTCACACACCACGTGTCCAATTTGTAGAACCATGGCTGAACCACGGCTCGAACCACAGCCACGAGAGGGTCCTAATGACTTAGTTCTTCATGGTGCACCAAGGGCTCTAGTCTTGGTTAAACCCATAGAAGGCACATCAGATGTTACTACTACTGCTGTGCCACCTAAAATCATTGGTTCAAATTCATGA 558 0.4337 MLIGTVLLSIVILWFLALHIYERFVLRHQARRGASINHLTLTLTHAHDRTEPRNTGLDPLLIKALPMFIFKKKGFHQQQREDHADNIDDCAVCLSAFDEEEMVRLLPNCKHIFHVGCIDKWLASHTTCPICRTMAEPRLEPQPREGPNDLVLHGAPRALVLVKPIEGTSDVTTTAVPPKIIGSNS* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0590 185 Pfam Ring finger domain 88 132 IPR001841 -
Lan19g0590 185 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Lan19g0590 185 PANTHER RING FINGER DOMAIN-CONTAINING 7 158 - -
Lan19g0590 185 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 7 158 - -
Lan19g0590 185 SMART ring_2 90 131 IPR001841 -
Lan19g0590 185 SUPERFAMILY RING/U-box 79 142 - -
Lan19g0590 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 137 IPR013083 -
Lan19g0590 185 CDD RING-H2_PA-TM-RING 89 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0590 Lan-Chr19 11094415 11094972 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0590 1 178 C3H Transcription Factor Family AT2G42360 40.860 7.51e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0590 K19038 - gmx:100780265 174.866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1126 16 18334676 18351157 Lan19g0590 19 11094415 11094972 LSH
Lan12g0872 12 15792815 15793797 Lan19g0590 19 11094415 11094972 PCT
Lan19g0590 19 11094415 11094972 Lan12g0872 12 15792815 15793797 PCT