Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0569 ATGGGGCGCATACCATGCTGTGAGAAGGAAAACGTTAAAAGAGGACAGTGGACACCAGAGGAAGACAATAAGCTTTCTTCCTACATTGCTCAACATGGCACACGAAATTGGCGTCTCATCCCGAAAAATGCTGGGCTCCAAAGATGTGGAAAGAGCTGCAGGCTGAGGTGGACTAACTACCTTCGTCCTGATCTTAAACATGGTCAATTCTTGGATTCAGAGGAACAAACCATTGTGAAACTTCATTCAGTTTTTGGTAACAGATGGTCACTAATAGCAGCTCAACTACCAGGACGCACCGACAATGATGTCAAAAACCATTGGAACACAAAGGTGAAAAAGAAACTATCAGGCATGGGTATTGACCCTGTGACCCACAAGTCATTCTCTCATCTCATGGCTGAAATTGCTACAACACTGGCACCCCCACAGGCAGCTCACCTAGCTGAAGCAGCCCTTGGCTGCTTCAAAGACGAGGTGCTCCACCTTCTTACAAAGAAGCCAATTAACTTTCTGGGCCAACATTCCGCCGCGCCACTAGGGAATGACATCAACAATTACATTAACTATAAGCAGGAAGAAATGGACCGAACTTCTGACAAGATTAAGCTTGGCTTTTCAAAGGATACCCATGACAAACCTGAAATGATACTCTCAAATAAAGCTTGGAACTCAACTGCAGCTACATCTGCAAGTTTTGCAATGCAATACAGTGTTTTCCCTACCATGCCTGTGTTTCAGTACAGTCCATCATCTTTGTGCAATAAAGAGGATGATGCATCACAATGGAGCCAAAGTGTATGTACTAGAAGCACATTCACACCCATGGATCATCAAAACCAGTTATATGAAAAACTTAAAGAAAATGGGGATGATTCGGAGGCTACAAAAGAAATGACAAATCTATCCAATATATTCAATCCAGATTGTGTCTTATGGGATTTACCAGCAGATGATTTAAATAACCCTATGGTATAA 978 0.4264 MGRIPCCEKENVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFLDSEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKVKKKLSGMGIDPVTHKSFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKPINFLGQHSAAPLGNDINNYINYKQEEMDRTSDKIKLGFSKDTHDKPEMILSNKAWNSTAATSASFAMQYSVFPTMPVFQYSPSSLCNKEDDASQWSQSVCTRSTFTPMDHQNQLYEKLKENGDDSEATKEMTNLSNIFNPDCVLWDLPADDLNNPMV* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0569 325 PANTHER F14D16.11-RELATED 1 325 - -
Lan19g0569 325 CDD SANT 72 110 IPR001005 -
Lan19g0569 325 Gene3D - 14 66 - -
Lan19g0569 325 SMART sant 66 114 IPR001005 -
Lan19g0569 325 SMART sant 13 63 IPR001005 -
Lan19g0569 325 CDD SANT 17 61 IPR001005 -
Lan19g0569 325 PANTHER TRANSCRIPTION FACTOR MYB80 1 325 - -
Lan19g0569 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan19g0569 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lan19g0569 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan19g0569 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan19g0569 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lan19g0569 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan19g0569 325 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Lan19g0569 325 Gene3D - 69 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0569 Lan-Chr19 9828114 9829909 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0569 1 171 MYB Transcription Factor Family AT5G56110 88.304 1.38e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan19g0569 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0569 K09422 - gmx:100800764 522.316