Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0553 ATGTTCAGTCAAAGCATGGATTCTGCAAGGGATGTGGGTGGTGTTTCAGGGACAGTGCTAATTCCTATGCGGTTTGTGTGGCCATATGGAGGAAGGAGTGTGTTTCTCAGTGGTTCTTTCACACGGTGGTCTGAGCTTCTACCGATGTCGCCAGTTGAAGGTTGCCCCAGTGTATTTCAAGTTGTTTATAGCGTGTCTCCTGGTTACCATCAGTACAAGTTTTATGTTGATGGAGAATGGCGGCATGATGAGCATCAACCTTATGTATCTGGAGAATATGGGATAGTCAACACTGTCCTTTTGGCTACGGATCCTAACTACATACCTGTTTTAACTCGAGAGATTCCTTCTGGAAATAACATGGATGTTGATAATGAGGCTTTTCGCCGAATGGTCCGCTTGCCAGATAGTACAAGAATATCAGATGCTGATGTACAGATCTCCCGGCAGTGTATTTCTGCATTTCTGTCTATGCACACAGCTTATGAATTGCTTCCCGAGTCAGGCAAGGTTGTTGCCTTGGATATTGAACTGCCTGTGAAGCAGGCATTTCATATACTGCATGAGCAGGGAATTTACGTGGCTCCACTTTGGGATTTTGGCAAGGGGAAATTTGTTGGTGTTCTTAGTGCTTCAGATTTTATTTTAATTTTAAGAGAGCTAGGGAATCATGGGTCTAATCTGACAGAGGAGGAGCTTGAAACACATACCATATCAGCTTGGAAAGAAGGAAAATCTTATCTAAATAGACAGAATAATGGTCGGGGAACTGTGTTTTCAAGAGGTTTTATCCATGCGGGACCAAATGATAACCTGAATGCTATTGCCATGAAGATCTTGCAAAAGGAGGTTTCAACTGTTCCTATTGTCCATTCATCTTCTGAGGATGGTTCATTTCCGCAATTACTACATCTCGCTTCACTTTCAGGAATATTGAAATGCATTTGCAGGTATTTTAGGCATTGTCCTAGTTCATTGCCTATACTTCAACTTCCAATTTGTGCAATACCTGTGGGCACTTGGGTGCCCAAAATTGGGGAACCAAATCGGCGGCCTCTGGCAATGCTGAGACCAAGTGCTTCTCTTGCTTCAGCCCTAAATTTATTAGTCCAAGCACAAGTAAGTTCAATACCAATAGTTGACGATAATGACTCATTGGTGGATATATATTGTCGGAGTGATATAACAGCTTTGGCGAAGGACAGAGCATATACACATATTAATCTTGACGAAATAACTGTTCAACAGGCTTTGCAGTTGGGTCAAGAGGCATATAGTCCCTATGAGCTTAGAAGTCAACGATGCCAGATGTGTTTGCGGTCTGATTCTTTGCATAAAGTGATGGAACGATTGGCAAATCCAGGTGTCCGGCGGCTCGTGATTGTAGAAGCTGGGAGCAAGCGTGTAGAAGGCATTGTTTCATTGGGTGACATATTCAAGTTCTTCCTTGGTTAG 1455 0.4302 MFSQSMDSARDVGGVSGTVLIPMRFVWPYGGRSVFLSGSFTRWSELLPMSPVEGCPSVFQVVYSVSPGYHQYKFYVDGEWRHDEHQPYVSGEYGIVNTVLLATDPNYIPVLTREIPSGNNMDVDNEAFRRMVRLPDSTRISDADVQISRQCISAFLSMHTAYELLPESGKVVALDIELPVKQAFHILHEQGIYVAPLWDFGKGKFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKSYLNRQNNGRGTVFSRGFIHAGPNDNLNAIAMKILQKEVSTVPIVHSSSEDGSFPQLLHLASLSGILKCICRYFRHCPSSLPILQLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLASALNLLVQAQVSSIPIVDDNDSLVDIYCRSDITALAKDRAYTHINLDEITVQQALQLGQEAYSPYELRSQRCQMCLRSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLGDIFKFFLG* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0553 484 CDD E_set_AMPKbeta_like_N 22 100 - -
Lan19g0553 484 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 13 484 - -
Lan19g0553 484 SMART cbs_1 434 483 IPR000644 -
Lan19g0553 484 SMART cbs_1 170 219 IPR000644 -
Lan19g0553 484 SMART cbs_1 352 400 IPR000644 -
Lan19g0553 484 SUPERFAMILY CBS-domain pair 151 322 IPR046342 -
Lan19g0553 484 Gene3D - 141 324 IPR046342 -
Lan19g0553 484 Gene3D - 341 484 IPR046342 -
Lan19g0553 484 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 13 484 - -
Lan19g0553 484 ProSiteProfiles CBS domain profile. 164 226 IPR000644 -
Lan19g0553 484 Pfam CBS domain 350 396 IPR000644 -
Lan19g0553 484 Pfam CBS domain 437 483 IPR000644 -
Lan19g0553 484 Pfam Glycogen recognition site of AMP-activated protein kinase 21 103 IPR032640 -
Lan19g0553 484 SUPERFAMILY E set domains 21 102 IPR014756 -
Lan19g0553 484 SUPERFAMILY CBS-domain pair 349 483 IPR046342 -
Lan19g0553 484 Gene3D Immunoglobulins 21 111 IPR013783 -
Lan19g0553 484 ProSiteProfiles CBS domain profile. 348 405 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0553 Lan-Chr19 9087288 9099427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0553 11 129 Protein tyrosine phosphatase (PTP) family AT3G01510 27.344 7.02e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0553 - - gmx:100781819 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1181 16 19275126 19287799 Lan19g0553 19 9087288 9099427 LSH
Lan12g1287 12 18646357 18653778 Lan19g0553 19 9087288 9099427 PCT
Lan19g0553 19 9087288 9099427 Lan12g1287 12 18646357 18653778 PCT