Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0534 ATGCTAGGAAGTCCAACTGTAGTTGTTACTGCTACAGATTTCTGTCCTCCAAATTATGGGCTTTCAGTTGACTATGGTGGCTGGTGTAATTTTCCAAGAGAACATTTTGAGATGTCACAGGTTGCATTTTCTGAAATTGCCAAGAGAAAAGCTGATATAGTGCCTGTTCAGTATAGAAGAAGTGGTGGCTTGAAATTCACTATGAGTGGAAGTTCTCACTTCTTTCAGGTTCTGATTACCAATGTAGGGATGGATGGGGAAGTGGCTGCTCTGAAAGTGAAGGGATCAAGAACAGGGTGGATACCCATGGCAAGGAATTGGGGACAAAATTGGCATTGCAATGTCAACCTTCAACATCAGCCTTTGTCCTTTGAGGTAACTATCAGCAGTGGAAAAACACTCACATCTTATAATGTAGCCACTGCAAAGTGGCAGTTTGGACAGACATTTGAAGGAAAACAGTTTTAG 468 0.4188 MLGSPTVVVTATDFCPPNYGLSVDYGGWCNFPREHFEMSQVAFSEIAKRKADIVPVQYRRSGGLKFTMSGSSHFFQVLITNVGMDGEVAALKVKGSRTGWIPMARNWGQNWHCNVNLQHQPLSFEVTISSGKTLTSYNVATAKWQFGQTFEGKQF* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0534 155 SMART dpbb_1 1 58 IPR007112 -
Lan19g0534 155 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 73 152 IPR007117 -
Lan19g0534 155 Pfam Expansin C-terminal domain 65 140 IPR007117 -
Lan19g0534 155 Gene3D - 63 153 IPR036749 -
Lan19g0534 155 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 60 IPR007112 -
Lan19g0534 155 SUPERFAMILY Barwin-like endoglucanases 3 81 IPR036908 -
Lan19g0534 155 Pfam Lytic transglycolase 5 58 IPR009009 -
Lan19g0534 155 PRINTS Expansin signature 7 17 IPR002963 GO:0009664
Lan19g0534 155 PRINTS Expansin signature 26 43 IPR002963 GO:0009664
Lan19g0534 155 PRINTS Expansin signature 43 56 IPR002963 GO:0009664
Lan19g0534 155 PRINTS Expansin signature 109 130 IPR002963 GO:0009664
Lan19g0534 155 PRINTS Expansin signature 138 154 IPR002963 GO:0009664
Lan19g0534 155 PANTHER EXPANSIN-A20 3 155 - -
Lan19g0534 155 Gene3D - 2 61 IPR036908 -
Lan19g0534 155 PANTHER EXPANSIN-A15 3 155 IPR002963 GO:0009664
Lan19g0534 155 SUPERFAMILY PHL pollen allergen 60 152 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0534 Lan-Chr19 8431009 8431541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0534 1 155 Expansin Gene Family AT4G38210 65.000 1.24e-78 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0534 - - lang:109333963 328.176