Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0528 ATGGCTCCTTCTTTCGTATTCGAACCCGCAAGCGATGAAGAAGTAGAACACTCCGAATCCGAACAAGACAATGAAAATGAAAACTCAGAACCAGAATCAGAAGATGATTATGATGTTGATGATCCTGAATCAGAAGAACTTGATGAAGAACCACGAAGAATAATACCAGTTACCAATAAGAAAACACAATCTCCTTGGGATTTCGCTAAATACTCTGAGTCTGTTGCTGAGGAACATTCTCGACGAAGCACAACTTCTGTTGATGAGAAAATCTCTAAAGTTATCAATCAACGTTCGGTGCCGCTGACTGTTCCTACACAAGAGGAGGATACTGATACCTCAGATTCTGAACCGGAAGATAAACAAGAGGATTATAGACCAGAAGAGGAAGATGAAGAAGATGATAATGTTGGTGACAACAAGCCCTTTTTTGCTCCTTCTGATGGAGCTTCTTTCGATGCTGATTCATTCATGCAGCTTAATTTGTCCCGACCTTTGCTCCGGGCTTGTGAGGCCCTGGGGTATGCTAAGCCAACACCAATTCAGGCAGCGTGTGTTCCACTTGCATTGACTGGTCGTGATATATGCGGAAGTGCCATCACTGGATCTGGGAAGACAGCCGCATTTGCACTACCCACTTTAGAGAGGTTGTTGTTCCGTCCAAAACGTATGCATGCAATAAGGGTCCTCATTCTCACTCCAACCAGAGAGTTGGCTGTTCAAGTTCACAGTATGATTGAGAAGCTTGCTCAGTTTACTGACATCAGGTGTTGCCTGGTTGTTGGAGGTCTATCAACAAAGGTCCAAGAGGTTGCATTGAGATCAATGCCAGACATTGTTGTAGCTACTCCAGGACGTATGATAGACCATTTACGGAATTCTATGTCAGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCTGATCGTCTTTTAGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTGTTCGCTCCTGTCCGAAAAAAAGGCAGACAATGCTATTTTCAGCAACCATGACTGAGGAGGTTGATGAGCTTATTAAACTTTCCCTGTCAAAACCATTACGTCTTTCTGCTGACCCATCTGCAAAGCGACCGGCAACCTTAACTGAGGAGGTTGTTAGGATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTGCTAGAGTGATCATCTTCAGTGGGACAAAGCAAGCGGCACATAGGTTGAAAATTATATTTGGATTAGCTGGCTTAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAGGCACAGCGGCTTGAAGCATTGGAACAGTTCAGAAAGCAGCAAGTTGATTTTTTGATTGCAACTGATGTGGCTGCTCGTGGTCTTGATATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACCGCAAGAGCTGGGAGAGAAGGATATGCTGTCACATTTGTTACCGATAATGACCGATCACTTCTAAAAGCCATAGCAAAGAGAGCTGGTTCAAAGCTGAAGAGCCGTACTGTTGCGGAGCAATCTATACTTAAATGGTCTCATATGATTGAGCAAATGGAGGATCAAGTTGCTGAAGTACTTCAAGAAGAGAGGGAAGAAAGAGTCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTACGCATCGGGAAGAGATCTATTCCCGCCCTAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAGAAGCTTGGTGCAAAAGCAGCAAAGGCATCTGTGGATAAGGGAAGGAATTCTGGAAAGGAGGTAATTAGTGCCGAACAAGCAGATGATATCAAAATGAAGGAAAAGAGGAAGCGGGAGCGGGAGAAAAATTTGCCTAGAAGGATGCGTAGAAAATTGGAAGCCTCTAGAGAGATGTTGGAGGACGATGAGCATGCCAATGAGCAAGAAGCTAAGGGGTCAAATAAGAAAGAAAAGGGTGGATTGTCACTTGTTGATCTTGCTTATCGACGGGCAAAAGCAGTGAAGGCTGTCAAGAAGGCTCTAGACAACGGAAAAATTGTCAAGAGTAAAAAGAAATCCAGTCGTCCTCCTCAAAAGACTTCTTCAAGGACCGAAGAGATGCGGGAGCTGTTCCAGACTGAGATAAAGGATAAAAAGCCAAATAGAAGAGGTGATGGAGCAGCAAAGAAGTCCAAGAAGAGTTCATTCAAAAGCAAGTCTAGGTACAAGCGCAAGTAG 2283 0.4363 MAPSFVFEPASDEEVEHSESEQDNENENSEPESEDDYDVDDPESEELDEEPRRIIPVTNKKTQSPWDFAKYSESVAEEHSRRSTTSVDEKISKVINQRSVPLTVPTQEEDTDTSDSEPEDKQEDYRPEEEDEEDDNVGDNKPFFAPSDGASFDADSFMQLNLSRPLLRACEALGYAKPTPIQAACVPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEVALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIQELVRSCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSAKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFTARVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVDFLIATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRTVAEQSILKWSHMIEQMEDQVAEVLQEEREERVLRKAEMEATKAENMITHREEIYSRPKRTWFVTEKEKKLGAKAAKASVDKGRNSGKEVISAEQADDIKMKEKRKREREKNLPRRMRRKLEASREMLEDDEHANEQEAKGSNKKEKGGLSLVDLAYRRAKAVKAVKKALDNGKIVKSKKKSSRPPQKTSSRTEEMRELFQTEIKDKKPNRRGDGAAKKSKKSSFKSKSRYKRK* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0528 760 MobiDBLite consensus disorder prediction 110 137 - -
Lan19g0528 760 Coils Coil 644 664 - -
Lan19g0528 760 PANTHER RNA HELICASE 57 716 - -
Lan19g0528 760 CDD SF2_C_DEAD 372 504 - -
Lan19g0528 760 Pfam Helicase conserved C-terminal domain 392 495 IPR001650 -
Lan19g0528 760 MobiDBLite consensus disorder prediction 713 747 - -
Lan19g0528 760 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 360 IPR014001 -
Lan19g0528 760 MobiDBLite consensus disorder prediction 89 109 - -
Lan19g0528 760 CDD DEADc_DDX27 166 361 - -
Lan19g0528 760 PANTHER BNAA01G17110D PROTEIN 57 716 - -
Lan19g0528 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 515 IPR027417 -
Lan19g0528 760 SMART helicmild6 410 495 IPR001650 -
Lan19g0528 760 MobiDBLite consensus disorder prediction 690 760 - -
Lan19g0528 760 MobiDBLite consensus disorder prediction 1 145 - -
Lan19g0528 760 Gene3D - 381 609 IPR027417 -
Lan19g0528 760 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 534 IPR001650 -
Lan19g0528 760 MobiDBLite consensus disorder prediction 72 88 - -
Lan19g0528 760 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 306 314 IPR000629 -
Lan19g0528 760 Pfam DEAD/DEAH box helicase 179 349 IPR011545 GO:0003676|GO:0005524
Lan19g0528 760 Coils Coil 533 573 - -
Lan19g0528 760 SMART ultradead3 174 375 IPR014001 -
Lan19g0528 760 Gene3D - 117 362 IPR027417 -
Lan19g0528 760 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
Lan19g0528 760 MobiDBLite consensus disorder prediction 690 704 - -
Lan19g0528 760 MobiDBLite consensus disorder prediction 599 673 - -
Lan19g0528 760 MobiDBLite consensus disorder prediction 14 47 - -
Lan19g0528 760 MobiDBLite consensus disorder prediction 599 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0528 Lan-Chr19 8225533 8312810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0528 110 512 Eukaryotic Initiation Factors Gene Family AT3G13920 33.088 2.26e-52 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0528 K13181 - gmx:100791233 1100.89