Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0522 ATGGGTAGTTGCTTTAGTAAAGGTAAAGATTCAGAAGCAGAATTCATTGGTCAAAGACATGTTGGATCTGCTACTGGTGTGAACAATCACAAGACTCATGAAACTTATGCAACACAAACTCATCAACCTTATCAGTTACCTGAAAAGCCTCATGTTCCTGTTCCAAGCCCAAAGCTAGACACAATCCTTGGAAAACCATTTGAGGATGTGAAACAATTCTACTCTCTTGGTAAAGAATTGGGTAGAGGGCAATTTGGGGTGACATATCTATGTACTGAGAATTCAACTGGTTTGTTATATGCATGTAAGTCAATCTCAAAAAAGAAACTTGTTAACAAATCTGATAAGGAGGATATAAAGAGAGAGATTCAGATTATGCAGCATTTGAGTGGTCAACCTAACATTGTTGAGTTCAAAGGTGCTTATGAGGATAAGAATTCTGTTCATGTTGTTATGGAACTTTGTGCTGGTGGTGAACTTTTTGATAGGATTATTGCTAAAGGGCATTATAGTGAAAAGGCTGCTGCTTCTATATGTAGACAAATTGTTAATGTTGTTCATATTTGCCATTTCATGGGTGTGATGCATAGGGATCTTAAGCCGGAGAATTTCTTGTTGTCAAGTAAGGATGAAAATGCTATTCTCAAGGCTACAGATTTTGGCTTGTCAGTTTTCATTGAAGAAGGAAAGCTGTATCGCGATATAGTTGGGAGTGCTTATTATGTTGCTCCAGAAGTACTAAGGCGCAGATGTGGGAAGGAAATCGATATATGGAGCGCAGGAGTTATGTTGTATATCTTACTTAGTGGTGTCCCTCCATTTTGGGCTGAGACCGAAAAGGGAATATTTGATGCTATATTGGAAGGTGTTATTGATTTTGAAAGTCAACCATGGCCTAATATATCAGACAGTGCTAAGGACCTTGTTCGCAAGATGCTTATACAGGATCCGAAGAAACGCATCACTGCTACTCAAGTTCTGGATCACCCATGGATTAAAGATGGAAATGCTTCTGACAAGCCAATAGCCAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCTATGAATAAACTAAAGAAACTTGCTCTCAAGGTCATTGCTGAGAATATGTCTGCGGAAGAGATCCAAGGCTTTAAGGCAATGTTTACAAATATGGACACTGACAAGAGTGGTTCAATCACCTATGAAGAACTAAAGGTGGGATTGCAAAGACTTGGTTCAAAACTTACAGAGGCTGAAGTGAAGCAACTTATGGAAGCTGCTGATGTAGATGGAAATGGCACAATCGACTACATAGAATTCATCACTGCTACAATGCATAGACACAGATTAGAAAGAGATGACCATCTTTACAAAGCCTTCCAATATTTTGATAAAGACAACAGTGGGTTTATTACAGGAGATGAACTGCAAGCTGCCATGAAAGAATATGGTATGGGTGATGATGCCACAATCAAGGAAATTATATCTGAAGTGGATACAATTATATCTGAAGTGGATACAGATAATGATGGAAGAATCAACTATGAAGAATTCTGTGCAATGATGAGGAGTGGAAACCAACAACATGCCAAGCTATTCTAA 1587 0.3869 MGSCFSKGKDSEAEFIGQRHVGSATGVNNHKTHETYATQTHQPYQLPEKPHVPVPSPKLDTILGKPFEDVKQFYSLGKELGRGQFGVTYLCTENSTGLLYACKSISKKKLVNKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDKNSVHVVMELCAGGELFDRIIAKGHYSEKAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDENAILKATDFGLSVFIEEGKLYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVMLYILLSGVPPFWAETEKGIFDAILEGVIDFESQPWPNISDSAKDLVRKMLIQDPKKRITATQVLDHPWIKDGNASDKPIASAVLSRMKQFRAMNKLKKLALKVIAENMSAEEIQGFKAMFTNMDTDKSGSITYEELKVGLQRLGSKLTEAEVKQLMEAADVDGNGTIDYIEFITATMHRHRLERDDHLYKAFQYFDKDNSGFITGDELQAAMKEYGMGDDATIKEIISEVDTIISEVDTDNDGRINYEEFCAMMRSGNQQHAKLF* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0522 528 ProSitePatterns EF-hand calcium-binding domain. 501 513 IPR018247 -
Lan19g0522 528 CDD STKc_CAMK 73 331 - -
Lan19g0522 528 CDD EFh 453 518 IPR002048 GO:0005509
Lan19g0522 528 ProSiteProfiles Protein kinase domain profile. 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0522 528 ProSiteProfiles EF-hand calcium-binding domain profile. 446 481 IPR002048 GO:0005509
Lan19g0522 528 Pfam EF-hand domain pair 449 518 IPR002048 GO:0005509
Lan19g0522 528 Pfam EF-hand domain pair 380 439 IPR002048 GO:0005509
Lan19g0522 528 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Lan19g0522 528 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Lan19g0522 528 SMART serkin_6 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0522 528 SUPERFAMILY Protein kinase-like (PK-like) 73 353 IPR011009 -
Lan19g0522 528 Pfam Protein kinase domain 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0522 528 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Lan19g0522 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Lan19g0522 528 ProSiteProfiles EF-hand calcium-binding domain profile. 488 523 IPR002048 GO:0005509
Lan19g0522 528 ProSitePatterns EF-hand calcium-binding domain. 423 435 IPR018247 -
Lan19g0522 528 SUPERFAMILY EF-hand 371 518 IPR011992 -
Lan19g0522 528 PANTHER SERINE/THREONINE-PROTEIN KINASE 34 523 - -
Lan19g0522 528 Gene3D Transferase(Phosphotransferase) domain 1 160 339 - -
Lan19g0522 528 ProSiteProfiles EF-hand calcium-binding domain profile. 410 445 IPR002048 GO:0005509
Lan19g0522 528 ProSitePatterns EF-hand calcium-binding domain. 459 471 IPR018247 -
Lan19g0522 528 Gene3D - 340 526 - -
Lan19g0522 528 SMART efh_1 492 520 IPR002048 GO:0005509
Lan19g0522 528 SMART efh_1 414 442 IPR002048 GO:0005509
Lan19g0522 528 SMART efh_1 378 406 IPR002048 GO:0005509
Lan19g0522 528 SMART efh_1 450 478 IPR002048 GO:0005509
Lan19g0522 528 Gene3D Phosphorylase Kinase; domain 1 76 159 - -
Lan19g0522 528 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-LIKE 34 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0522 Lan-Chr19 7934691 7940687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0522 1 528 EF-hand Containing Proteins AT3G20410 72.909 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan19g0522 Pkinase 3.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0522 K13412 - gmx:100798651 906.746