Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0513 ATGATGATTTCAAGAGATGATGTTAGGGTTTTGTCGCCGTGTCAATTTCCGAATTCAAGTTCTGGTAATAAAAAGATAGATAAGGTTCCGTTGAATTTACCCCATTCTAATGATTTTGGGGTTGGAAAAAATCCTCCATTTTCTGATACCAAAGGTTCAGAAGACAGTGAGCATCTATTGGTTGGTGGAAGATTGGGGAAATCTTTGAAGAGAGCAAGAACGAAAAGTGAAAATTTGAAAGAAAGAAGGAAACAGTTCATACCTGTAAGTTCAGCCTCTGAAACTGATGGTCTTATGAGAGAGCTCAGGAGGCAAAAAAATCATTCATCTGCAGATGGTTTTGTTCGGCCTAGCTCCACAGATCATAATAATTTAGTGGGTTCCTGCTCTAACCTGGACCTTAAATCTGGAAAGGGCTCTGGTGCACTGTTTCCTGCAAATCCCGATGATTCACATGCAAGTACAAACATCTGTTCGTTTTGCCAGTCCTCTAACATCTCTGAGGCCACTGGGGTTATGCTGCATTGTGCAAATGGATATATGGTTACAGGAGATAAAGCAATGCAACCAAATGACATACATGTGCATAAAATTTGCTTTGACTGGGCGCCGCAAGTGTATTTTGTCGATGATGTTGTTAAGAATTTGAAGTCAGAAGTGGCAAGGGGAGCAAAACTTAAATGCAGCAAATGTGGCCTGAAAGGAGCTGCTCTCGGCTGCCTTGTCAATTCCTGTAGAAAAACTTATCATGCTCCTTGTGCAATGGGCATCTCCACTTGCCGTTTCGATCATGAGAGTTTTCTAATGCTCTGTCCAGCTCATGCTCATGTCAAATTTCCAAATGAGAAATTAAGGTCTAAGAAACAGCCAACTCAGAAGCTTCCAGGTTTATCTCATCTGCCATCTCATGAGTCAAACCCTCTCTTAGCTTTACAGGATGATAGTAAAAAATTGGTTTTTTGTGGATCTTCTCTACCAGATGATGGAAAGGTACTTTTGGTCAATTTTTCAGATAAGGTTGGTGCGGCAGTGACCAAGTATTGGACTCCAAATGTCACCCATGTGATTGCTGCAACTGATGAAAATGGAGCATGCTCCAGGACACTAAAAGTTCTTATGGCAATTCTAAATGGACAATGGATTCTTAAAATGGATTGGGTAAAAGCTGGCATGGAAAGAATGACTATGGTAGAAGAAGAACCATATGAAATTAGTCTTGACAACCAAGGATGTCATGGTGGCCCAAAAGCTGGAAGACTTAGGGCACTGGCCAATGAACCAAAGCTATTTAGTGACTTGAAGTTTTATTTTTCTGGGGATTATATGACTACTTATAAGGAAGATCTTGAAGACTTGGTTGAGCTGGGAGGAGGTACTGTCTTGAGAAGCAAGGAAGAATTAGAAGCAAGAAGACATGAATGTGTAGCAGAACCTTCGAAGATGCTCATTGTCTACAACATTGACCCCCCAGAAGGATGTAACTTGGGGGAGGAACTTTCAATTCTTTGGCAGAGACTGAATGAGGCAGAAGAGTTAGCTGCTAATACTGGTTACCAAGTTATTAATCACACATGCATTCTGGAGTGCATTGCTGCTTGTAAGTTGCAACATTTTCGTAGCTAA 1623 0.4104 MMISRDDVRVLSPCQFPNSSSGNKKIDKVPLNLPHSNDFGVGKNPPFSDTKGSEDSEHLLVGGRLGKSLKRARTKSENLKERRKQFIPVSSASETDGLMRELRRQKNHSSADGFVRPSSTDHNNLVGSCSNLDLKSGKGSGALFPANPDDSHASTNICSFCQSSNISEATGVMLHCANGYMVTGDKAMQPNDIHVHKICFDWAPQVYFVDDVVKNLKSEVARGAKLKCSKCGLKGAALGCLVNSCRKTYHAPCAMGISTCRFDHESFLMLCPAHAHVKFPNEKLRSKKQPTQKLPGLSHLPSHESNPLLALQDDSKKLVFCGSSLPDDGKVLLVNFSDKVGAAVTKYWTPNVTHVIAATDENGACSRTLKVLMAILNGQWILKMDWVKAGMERMTMVEEEPYEISLDNQGCHGGPKAGRLRALANEPKLFSDLKFYFSGDYMTTYKEDLEDLVELGGGTVLRSKEELEARRHECVAEPSKMLIVYNIDPPEGCNLGEELSILWQRLNEAEELAANTGYQVINHTCILECIAACKLQHFRS* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0513 540 CDD ePHD 158 274 - -
Lan19g0513 540 Pfam BRCT domain, a BRCA1 C-terminus domain 427 537 IPR001357 -
Lan19g0513 540 SUPERFAMILY BRCT domain 318 405 IPR036420 -
Lan19g0513 540 Gene3D BRCT domain 314 420 IPR036420 -
Lan19g0513 540 SMART BRCT_7 312 394 IPR001357 -
Lan19g0513 540 SMART BRCT_7 427 533 IPR001357 -
Lan19g0513 540 CDD BRCT_Bard1_rpt1 318 389 - -
Lan19g0513 540 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 73 537 IPR031099 GO:0006281|GO:0006974
Lan19g0513 540 SUPERFAMILY BRCT domain 429 538 IPR036420 -
Lan19g0513 540 MobiDBLite consensus disorder prediction 15 56 - -
Lan19g0513 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 277 IPR013083 -
Lan19g0513 540 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 73 537 - -
Lan19g0513 540 Pfam BRCA1 C Terminus (BRCT) domain 339 388 IPR001357 -
Lan19g0513 540 ProSiteProfiles BRCT domain profile. 341 404 IPR001357 -
Lan19g0513 540 Pfam PHD-like zinc-binding domain 196 274 - -
Lan19g0513 540 Gene3D BRCT domain 427 533 IPR036420 -
Lan19g0513 540 ProSiteProfiles BRCT domain profile. 425 540 IPR001357 -
Lan19g0513 540 ProSiteProfiles Extended PHD (ePHD) domain profile. 155 275 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0513 Lan-Chr19 7773869 7778867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0513 348 461 Core DNA Replication Machinery Family AT4G02110 32.500 1.42e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0513 K10683 - gmx:100784883 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0480 9 7149746 7155939 Lan19g0513 19 7773869 7778867 LSH