Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0498 ATGCACATGATGCAAGGTTCTTCTTCTTCCATTTACTCAACTCTTTCTAAAGATGATAACTTTGTCTTCTCCTCTGAGGATTCTTCATGCCCAGATGAGTCTAACCTTCATTTGGGTCTTGGATTAAGCCTTTCTCCTTCTCCAATTGCTCCATATGCTGGAATATTGAGTGCTAAGGATTTTCCTTCTTCCTCAGCTTCATCTTCTTCTTCATCTTCTTCTTTAAATAGAAAGAGTAATGTTACTTATGGGAATAAGAGAGGTGCTGATTCTGTTGTCTCCACCAATGGTTCCAGACAGGTGGTTGGGTGGCCTCCCCTTAGAACATATAGAATGAATAGCCTTAATAACAATTCAAAATTACCAGATGCTGAAGTAATCAAATCTATGGTTGACAAAAGTAAGAGCAATGTTGCTGTGGAAAGTAGCATTGATAAAAACATTATTGCCAAAGAAAAGGAAAACTTCAAGAGTTCCTTGTTTGTGAAGGTAAATAAGGATGGCGTGCCGATTGGAAGGAAGGTTGACTTGAGTGCTCATTGTTCCTATGAAACCTTAGCTCGAACCTTGGAGGATATGTTTAATGAACCAACTACGGTCACTGCTTGCATAGGATCAAATGGAGAGGGTCATGGCATTACCGCTGGAACGGATGGGCAATCAAAATTGTTGGATGGATCTTCCAATTTTGTGCTCACTTACGAAGACGGGGAAGGTGACTGGATGCTTGTTGGAGATGTTCCTTGGTGGATGTTCCTTAGCTCTGTAAGAAGGCTAAGAATCATGAAAACATGTGAGACAAATGGACTTGCACCAAGATTGGAAGAAAAGAACAGAAGATTGAAAAACAAGCCCATATAG 861 0.403 MHMMQGSSSSIYSTLSKDDNFVFSSEDSSCPDESNLHLGLGLSLSPSPIAPYAGILSAKDFPSSSASSSSSSSSLNRKSNVTYGNKRGADSVVSTNGSRQVVGWPPLRTYRMNSLNNNSKLPDAEVIKSMVDKSKSNVAVESSIDKNIIAKEKENFKSSLFVKVNKDGVPIGRKVDLSAHCSYETLARTLEDMFNEPTTVTACIGSNGEGHGITAGTDGQSKLLDGSSNFVLTYEDGEGDWMLVGDVPWWMFLSSVRRLRIMKTCETNGLAPRLEEKNRRLKNKPI* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0498 286 SUPERFAMILY CAD & PB1 domains 154 263 - -
Lan19g0498 286 ProSiteProfiles PB1 domain profile. 159 264 IPR000270 GO:0005515
Lan19g0498 286 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 15 276 - -
Lan19g0498 286 Pfam AUX/IAA family 72 273 IPR033389 -
Lan19g0498 286 MobiDBLite consensus disorder prediction 65 98 - -
Lan19g0498 286 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 15 276 IPR003311 GO:0005634|GO:0006355
Lan19g0498 286 Gene3D - 153 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0498 Lan-Chr19 7370299 7374203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0498 162 272 B3 DNA Binding Superfamily AT5G62000 32.432 5.69e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan19g0498 AUX_IAA 4.9e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0498 K14484 - gmx:100779400 317.39