Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0477 ATGGCCGCCTCATCACGGCGGCTCCGGGACCTTCAATCTCAATCCGGCAACAAGATATGTGTTGACTGTTCCCAAAAGAATCCTCAATGGGCCTCAGTCTCCTACGGCATCTTCATGTGTCTAGAATGTTCCGGTAAGCACCGTGGCCTCGGCGTTCATATCTCCTTCGTTAGATCCGTTACTATGGATTCATGGTCCGATATTCAGATCAAGAAAATGGAAGCCGGTGGCGGAAACGATAATCTCAATGCGTTTCTCGCCAATTACGGTATTCCTAAAGAAACTGATATTGTTACCAAATACAATACCAACGCTGCCACGGTTTATCGTGACAAGGTTCAGGCCATCGCTGATGGCCGTCCTTGGCGCGATCCCCCGGTGGTGAAGGAGAATCTGCATAACGGTAAGGGGAAACCGCCGTTGGGAGGAGCCAGAGTTTCTTCTGGAGGAGGAGGTGGTTCTGGTTGGGATAATTGGGATGATGATGGTCATGGGTCGAGGAATAATGATATTAGGAGAAATCAGAGTAGTGTTGATGTTAGAGGAGGGATTGGTGGTGGTGGAGCACCAGCGCGATCGAAGTCGTCCCAGGATATTTATACTCGGTCGCAATTGGAGGCTTCTGCTGCTAATAAGGAGAGTTTCTTTGCTCAGAAGATGGTGCAGAATGAGTCGCGGCCTGAGGGTCTTCCGCCGTCTCAGGGTGGGAAGTATGTTGGGTTTGGATCGAGTCCAGCACCTTCGCAGAGGAGTAGTAATCAGCAGAATGATTATTATTCTGTTGTTTCTCAGGGGATTGGTAAATTATCATTGGTTGCTCAATCTGCTGCTAGTGTTGTTCAGGCTGGCACCAAAGAGATCACTGCTAAGGTAAAGGAAGGTGGTTATGATCATAAAGTGAATGAAACTGTCACTGTTGTTACGCAGAAGACATCAGAGATTGGACAAAGGACGTGGGGTATAATGAAAGGAGTAATGGCTATGGCTTCACAGAAGGTTGGAGAGTTCACTAGAGACAACCCAAGTTGGAACTCTGATAACTGGCAAGGAAATGAAAATAATAGAAATGGTTTGCATCAGGAGTACAATCAAGAGAATAGTGGCTGGAATTCTTCTTCCAGAGGAGGACAACCTTCATCTGTTGGACAAACTAATACTTATCACTCAAACTCTTCAGATGATTGGGGCCTTAAAGATTCTAGGAAGGAAGAACTAGCGAAAGGATCAAGTCCTCAGTCATCTAATACTCGCAATTCAAGCTCTTGGGATGATTGGGACAATGAATATACTGTGAAGAAAGAACCAGCTAAAGGACCAGCTTCCCATACTAGTGATGCTTGGGCTGGCTGGGATGATGGATTTGATAGCCGGAATGCATCTAATAATAAAACTGTCGGTCATAATGGGAAGTCAGATTCCGCTTGGACTGGAGGAGGATTTCATTAA 1446 0.462 MAASSRRLRDLQSQSGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSDIQIKKMEAGGGNDNLNAFLANYGIPKETDIVTKYNTNAATVYRDKVQAIADGRPWRDPPVVKENLHNGKGKPPLGGARVSSGGGGGSGWDNWDDDGHGSRNNDIRRNQSSVDVRGGIGGGGAPARSKSSQDIYTRSQLEASAANKESFFAQKMVQNESRPEGLPPSQGGKYVGFGSSPAPSQRSSNQQNDYYSVVSQGIGKLSLVAQSAASVVQAGTKEITAKVKEGGYDHKVNETVTVVTQKTSEIGQRTWGIMKGVMAMASQKVGEFTRDNPSWNSDNWQGNENNRNGLHQEYNQENSGWNSSSRGGQPSSVGQTNTYHSNSSDDWGLKDSRKEELAKGSSPQSSNTRNSSSWDDWDNEYTVKKEPAKGPASHTSDAWAGWDDGFDSRNASNNKTVGHNGKSDSAWTGGGFH* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0477 481 MobiDBLite consensus disorder prediction 336 393 - -
Lan19g0477 481 ProSiteProfiles ARF GTPase-activating proteins domain profile. 5 122 IPR001164 GO:0005096
Lan19g0477 481 SMART arf_gap_3 5 122 IPR001164 GO:0005096
Lan19g0477 481 Gene3D Arf GTPase activating protein 2 125 IPR038508 -
Lan19g0477 481 PRINTS HIV Rev interacting protein signature 17 36 IPR001164 GO:0005096
Lan19g0477 481 PRINTS HIV Rev interacting protein signature 36 53 IPR001164 GO:0005096
Lan19g0477 481 PRINTS HIV Rev interacting protein signature 57 78 IPR001164 GO:0005096
Lan19g0477 481 MobiDBLite consensus disorder prediction 120 200 - -
Lan19g0477 481 Pfam Putative GTPase activating protein for Arf 6 109 IPR001164 GO:0005096
Lan19g0477 481 MobiDBLite consensus disorder prediction 336 481 - -
Lan19g0477 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 414 - -
Lan19g0477 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 409 480 - -
Lan19g0477 481 MobiDBLite consensus disorder prediction 222 255 - -
Lan19g0477 481 MobiDBLite consensus disorder prediction 407 425 - -
Lan19g0477 481 SUPERFAMILY ArfGap/RecO-like zinc finger 6 110 IPR037278 -
Lan19g0477 481 MobiDBLite consensus disorder prediction 455 471 - -
Lan19g0477 481 CDD ArfGap_ArfGap1 4 119 - -
Lan19g0477 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 409 480 IPR044519 GO:0005096|GO:0016192
Lan19g0477 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 414 IPR044519 GO:0005096|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0477 Lan-Chr19 6924325 6928636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0477 6 93 C2H2 Transcription Factor Family AT4G21160 48.864 3.19e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0477 K12492 - gmx:100778302 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0477 19 6924325 6928636 Lan11g1377 11 21148937 21153971 PCT
Lan19g0477 19 6924325 6928636 Lan20g1020 20 10945986 10951227 PCT
Lan11g1377 11 21148937 21153971 Lan19g0477 19 6924325 6928636 PCT
Lan20g1020 20 10945986 10951227 Lan19g0477 19 6924325 6928636 PCT