Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0465 ATGAAGAGACAAAGAGATATTGAAGTATTAGAGAGCATAGATTTGGCTAATTGTGTCATGCTTCTAACTCATCCCCAACCACATAACCCTGTGGAATTTGAGTGCAAGACATGCAACAGAAAATTCTCATCTTTCCAAGCACTAGGTGGCCACATGACTAGTCACAAGAGGCCAAAACTTGAGGCTGAAGAAACAATAGCACAAGCTAAAACTCTTACTCTAACCTTAGGGCACAAACCAAAATTTCACAAGTGTTCCATTTGTGGACAAGAATTCTCTCTAGGACAAGCACTTGGAGGCCACATGAAAAGGCATAGAGGTGCCATCAATGAAGATGTTTCTTCAATAAAAAAGGTTGTTGTTGCAAAAGTAGCACCAGTTTTGAAAAGATCAAATAGCATAAGGGTTATGTGGTTGGACTTGAACTTTACACCGCTAGAGAATGACTTGAATTTATTGTTTGGAAAGATGACACCTAAAGTGCATGCCTTCTTAAAATTTTCATCTTTTCAAGCACTAAGTGGCCACATGACTAGTCACGAGAGGCCAAAACTTGAGGCTGAAGAAACAATAGCACAAGCTAAAACTCTTACTCTAAGCTTAGGGCACAAACCAAAATTTCACAAGTTCTCCATTTGTGGACAAGAATTCTCTCTAGGACAAGCACTTGGAGGCCACATGAAAAGGCATAGAGGTACCATCAATGAAGATGTTTCTTCAATAAAAAAAGGTTGTTGCTGCAAAAGTAGTACCAGTTTTGAAAAGATCAAATAG 774 0.3889 MKRQRDIEVLESIDLANCVMLLTHPQPHNPVEFECKTCNRKFSSFQALGGHMTSHKRPKLEAEETIAQAKTLTLTLGHKPKFHKCSICGQEFSLGQALGGHMKRHRGAINEDVSSIKKVVVAKVAPVLKRSNSIRVMWLDLNFTPLENDLNLLFGKMTPKVHAFLKFSSFQALSGHMTSHERPKLEAEETIAQAKTLTLSLGHKPKFHKFSICGQEFSLGQALGGHMKRHRGTINEDVSSIKKGCCCKSSTSFEKIK* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0465 257 SMART c2h2final6 33 55 IPR013087 -
Lan19g0465 257 SMART c2h2final6 83 105 IPR013087 -
Lan19g0465 257 SMART c2h2final6 208 230 IPR013087 -
Lan19g0465 257 Pfam C2H2-type zinc finger 167 183 - -
Lan19g0465 257 Pfam C2H2-type zinc finger 83 107 - -
Lan19g0465 257 Pfam C2H2-type zinc finger 33 58 - -
Lan19g0465 257 Pfam C2H2-type zinc finger 211 232 - -
Lan19g0465 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Lan19g0465 257 PANTHER ZINC FINGER PROTEIN ZAT5 166 249 - -
Lan19g0465 257 PANTHER ZINC FINGER PROTEIN ZAT5 1 160 - -
Lan19g0465 257 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 166 249 - -
Lan19g0465 257 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 160 - -
Lan19g0465 257 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Lan19g0465 257 Gene3D Classic Zinc Finger 30 105 - -
Lan19g0465 257 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Lan19g0465 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Lan19g0465 257 SUPERFAMILY beta-beta-alpha zinc fingers 33 105 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0465 Lan-Chr19 6509626 6516416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0465 102 241 C2H2 Transcription Factor Family AT2G37430 39.007 3.63e-17 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan19g0465 zf-C2H2_6 3.4e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0465 - - lang:109333947 508.449