Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0464 ATGACATTAATATTCGACAAGCAGTTATCCCTGATGAAAAGACAAATAGACAATGAAGGGAATGTGGAATTTGAGTGCAAGACTTGCACCCGCAAATTCTCTTCTTTTCAAGCCCTTGGTGGCCACAGGGCTAGTAGCCACAAAAGGGTTAAGCTTGTTAGTGAAGAACTTAAAGAACAAGCCAAGTCTCTAAGCTTGTGGAATAAACCAAAATTGTATGAGTGCTCAATTTGTGGCATGGGATTTTCTCTAGGCCAGGCACTAGGAGGCCACATGAGAAAGCATATTCGCAATGAAGGGTTTTGTTTTATCAACCATGTTATTGCAAAAAAACCAGTTCTGAAAAGATCCAATTGTACAAGGGTTATGTCCTTGGACTTGAACTTGACCCCTCTTGAGAATTACTTGATGTTTGGAAAGAAGGCACCCCTAGTTCCACTTTCTTTGTTTTGA 453 0.404 MTLIFDKQLSLMKRQIDNEGNVEFECKTCTRKFSSFQALGGHRASSHKRVKLVSEELKEQAKSLSLWNKPKLYECSICGMGFSLGQALGGHMRKHIRNEGFCFINHVIAKKPVLKRSNCTRVMSLDLNLTPLENYLMFGKKAPLVPLSLF* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0464 150 SUPERFAMILY beta-beta-alpha zinc fingers 24 95 IPR036236 -
Lan19g0464 150 Gene3D Classic Zinc Finger 13 66 - -
Lan19g0464 150 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 52 IPR013087 -
Lan19g0464 150 PANTHER ZINC FINGER PROTEIN ZAT5 9 143 - -
Lan19g0464 150 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 9 143 - -
Lan19g0464 150 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Lan19g0464 150 Gene3D Classic Zinc Finger 67 111 - -
Lan19g0464 150 Pfam C2H2-type zinc finger 73 95 - -
Lan19g0464 150 Pfam C2H2-type zinc finger 24 49 - -
Lan19g0464 150 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 100 IPR013087 -
Lan19g0464 150 ProSitePatterns Zinc finger C2H2 type domain signature. 26 47 IPR013087 -
Lan19g0464 150 SMART c2h2final6 24 47 IPR013087 -
Lan19g0464 150 SMART c2h2final6 73 95 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0464 Lan-Chr19 6494771 6495810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0464 7 140 C2H2 Transcription Factor Family AT2G37430 50.000 1.69e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan19g0464 zf-C2H2_6 5.3e-09 CL0361