Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0463 ATGGTGATGAATTCTGAGAAATCGGATCGTGAAATCTTCAAGGCTTGGGCGAAAGACGTTGCGGAATGCGAAGAACACTTCAAGGTGAGTGTGAAAACTGGATTGAGCAGTGAGGAGGTCCAGAATCGACGACGGATCTATGGATTGAACGAATTGGAGAAGCATGAAGGCCAATCGATTTGGAAATTGGTTCTGGAACAGTTCAACGACACGCTTGTGCGGATTCTCCTCGCCGCTGCAATAATCTCCTTCGTCCTTGCCTGGTACGACGGCAAAGAAGGTGGCGAGATGGATATAACCGCTTTCGTGGAGCCATTGGTGATTTTCTTGATTTTAATTGTGAACGCTATTGTTGGTGTTTGGCAAGAGAGCAACGCCGAGAAGGCGCTGGAAGCGTTGAAGGAAATTCAATCGGAGCATGCCACAGTTATTCGAGATAACCAGAAAATTCCAGATTTACTAGCGAAGGAATTAGTCCCTGGTGATATTGTTGAGCTTAAGGTTGGTGATAAGGTTCCAGCAGATATGCGAGTGGTGCAGTTGATTAGCTCAACTTTGCGGTTAGAGCAGGGTTCCTTAACTGGAGAGAGTGAAGCTGTGAACAAAACTAACAAGCCTGTTCTGGAAGATACGGATATTCAAGGGAAGAGATGTATTGTTTTTGCGGGCACCACGGTTGTTAATGGTAACTGCATTTGCTTGGTTACTCAGATTGGGATGGACACTGAGATTGGGAAGGTGCATAACCAGATACAGGAGGCTTCGCAGAGTGAGGAGGATACACCATTGAAGAAGAAGCTGAATGAATTCGGAGAGACTCTGACTAAGATAATTGGATTGATATGCATATTGGTTTGGCTTATCAATGTTAAATACTTCCTGAGCTGGGAAATTGTTGATGGCTGGCCGAGGAACTTTAAGTTCTCCTTTGAGAAGTGTACTTATTACTTTGAGATCGCTGTGGCTTTGGCTGTGGCTGCTATTCCGGAAGGTTTGCCTGCGGTGATCACAACTTGTTTGGCTCTAGGTACACGTAAGATGGCGCAGAAGAATGCGCTGGTTCGGAAGCTACCAAGTGTGGAAACTCTGGGCTGTACCACTGTAATTTGTTCGGATAAAACTGGTACATTGACTACGAATCAGATGTCAGTGACGAAATTGGTAGCTATTGGGACCAATGTTGATACGCTACGAGCCTTCAAGGTGGAAGGGACTACCTACAATCCAGCTGCTGGGAGAATAGAGAACTGGCCGGCTGGTAAATTGGATGCAAATCTTGAGATGATAGCAAAAATTGCTGCCATCTGTAATGATGCTGGAGTCACACAGTCGGAGCATAAGTTTGTAGCCCATGGAATGCCAACTGAAGCAGCATTGAAGGTTTTGGTTGAGAAGATGGGCCTTCCTGAAGGATCCAAGGATGGATCATCAGCAACTTCAAGTAGTGTGCTCCGTTGTTCTGAATGGTGGCAAAAACATGACCCGCGGATTGCCACTCTTGAGTTTGACCGTGATAGGAAGTCAATGGGTGTTATTGTTGACTCTAGTCTGGGGAAAAAGTCACTGCTGGTTAAGGGTGCTGTAGAAAACCTGTTAGAAAGAAGCTCTAAAATTCAGTTGTCTGATGGTTCTGTTGTGAAACTGGACAATAATGCTAAGAACCTTGTCTTGCAAGCTCTCCATGAAATGTCAACTAGTGCATTACGCTGTTTGGGATTTGCGTACAAGGATGAGCTCCCTGACTTTGAAAGCTACAGTGGTAATGACGATCATCCAGCTCATCAGCTTTTGCTTAATCCTTCCAACTATTCATCAATTGAGAGTGACCTCATTTTTGTTGGCTTGGCTGGGTTGAGGGATCCTCCTAGGGAAGAGGTATACCAAGCAATTCAGGACTGCAGAGCAGCTGGAATTCGTGTTATGGTTATTACTGGTGACAACAAGAACACTGCAGAAGCTATATGCCATGAAATAGGTGTATTTGGACCAAATGAAGACATTAGTTCGAGAAGTTTAACTGGCAGAGATTTTATGGAACTGCGTGATAAAAAAGCCCATCTGAGACAGAGTGGTGGACTTTTATTTTCGAGGGCTGAACCTAGGCACAAGCAAGAAATTGTGAGGCTGCTCAAAGATGATGGAGAGGTGGTGGCCATGACTGGAGATGGTGTGAATGATGCACCTGCCTTAAAGCTTGCTGACATTGGTATTGCAATGGGCATTGCAGGGACAGAGGTGGCAAAGGAAGCTTCAGATATGGTGTTGGCAGACGATAATTTTAGTTCAATTGTTTCTGCTGTTGGTGAGGGTAGATCTATCTACAATAATATGAAGGCTTTTATCAGGTACATGATCTCTTCCAATATTGGTGAGGTTGCTTCCATATTTCTAACAGCTGCACTAGGTATCCCTGAAGGGTTGATACCCGTCCAGCTTCTGTGGGTCAATCTTGTCACTGATGGACCCCCTGCAACAGCTTTGGGATTTAATCCTCCCGATAAGGATATAATGAAGAAGCCTCCCCGCCGTAGTGACGACTCACTGATCAATTTGTGGATTCTATTCCGCTACTTGGTAATTGGGGTTTATGTTGGATTAGCTACAGTTGGTGTCTTCATCATATGGTATACACACGATTCCTTCTTGGGTATTGACCTTAGTGGGGACGGGCATACACTTGTAACTTATTCCCAACTTGCCAACTGGGGTCAATGCTCCTCATGGGATAACTTCACAGCTTCTCCCTTCACCGCCGGTTCTAAAGTTATCTCTTTTGATACACCCTGTGACTATTTCCAAGCTGGTAAAGTGAAAGCTATGACACTATCCCTCTCTGTGTTGGTAGCCATTGAAATGTTCAACTCTCTCAATGCCCTTTCTGAAGATGGAAGCCTTCTAACAATGCCCCCTTGGGTCAACCCTTGGCTTCTTGTAGCAATGTCTGTGTCATTTGGTCTGCACTTTTTGATCTTGTATGTACCATTCTTAGCACAAGTATTTGGTATCGTGCCCCTGAGCGTTAACGAGTGGCTTTTGGTTCTGGCTGTTGCGCTTCCGGTGATTCTAATAGATGAAATTCTGAAATTCATTGGGAGGTGGAGAAGTACAAGTGGGTCTCAAGCAGCAGCTGCAAGATCAAAACAAAAATCAGAATAA 3156 0.448 MVMNSEKSDREIFKAWAKDVAECEEHFKVSVKTGLSSEEVQNRRRIYGLNELEKHEGQSIWKLVLEQFNDTLVRILLAAAIISFVLAWYDGKEGGEMDITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSEHATVIRDNQKIPDLLAKELVPGDIVELKVGDKVPADMRVVQLISSTLRLEQGSLTGESEAVNKTNKPVLEDTDIQGKRCIVFAGTTVVNGNCICLVTQIGMDTEIGKVHNQIQEASQSEEDTPLKKKLNEFGETLTKIIGLICILVWLINVKYFLSWEIVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTKLVAIGTNVDTLRAFKVEGTTYNPAAGRIENWPAGKLDANLEMIAKIAAICNDAGVTQSEHKFVAHGMPTEAALKVLVEKMGLPEGSKDGSSATSSSVLRCSEWWQKHDPRIATLEFDRDRKSMGVIVDSSLGKKSLLVKGAVENLLERSSKIQLSDGSVVKLDNNAKNLVLQALHEMSTSALRCLGFAYKDELPDFESYSGNDDHPAHQLLLNPSNYSSIESDLIFVGLAGLRDPPREEVYQAIQDCRAAGIRVMVITGDNKNTAEAICHEIGVFGPNEDISSRSLTGRDFMELRDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKDDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSSIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINLWILFRYLVIGVYVGLATVGVFIIWYTHDSFLGIDLSGDGHTLVTYSQLANWGQCSSWDNFTASPFTAGSKVISFDTPCDYFQAGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLVAMSVSFGLHFLILYVPFLAQVFGIVPLSVNEWLLVLAVALPVILIDEILKFIGRWRSTSGSQAAAARSKQKSE* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0463 1051 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 1034 IPR023298 -
Lan19g0463 1051 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 5 1047 - -
Lan19g0463 1051 Gene3D - 66 1032 - -
Lan19g0463 1051 Pfam haloacid dehalogenase-like hydrolase 367 734 - -
Lan19g0463 1051 SFLD p-type atpase 351 772 IPR044492 -
Lan19g0463 1051 SUPERFAMILY HAD-like 611 824 IPR036412 -
Lan19g0463 1051 Pfam E1-E2 ATPase 136 350 - -
Lan19g0463 1051 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 107 297 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan19g0463 1051 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 309 392 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan19g0463 1051 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 694 801 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan19g0463 1051 PANTHER CALCIUM-TRANSPORTING ATPASE 5 1047 - -
Lan19g0463 1051 Gene3D - 367 765 IPR023214 -
Lan19g0463 1051 Pfam Cation transporting ATPase, C-terminus 805 1030 IPR006068 -
Lan19g0463 1051 SFLD C1.7: P-type atpase like 351 772 - -
Lan19g0463 1051 SUPERFAMILY Calcium ATPase, transduction domain A 138 250 IPR008250 -
Lan19g0463 1051 Gene3D - 33 252 - -
Lan19g0463 1051 ProSitePatterns E1-E2 ATPases phosphorylation site. 372 378 IPR018303 -
Lan19g0463 1051 SMART Cation_ATPase_N_a_2 14 88 IPR004014 -
Lan19g0463 1051 Pfam Cation transporter/ATPase, N-terminus 16 83 IPR004014 -
Lan19g0463 1051 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 377 618 IPR023299 GO:0000166
Lan19g0463 1051 PRINTS P-type cation-transporting ATPase superfamily signature 189 203 - -
Lan19g0463 1051 PRINTS P-type cation-transporting ATPase superfamily signature 370 384 - -
Lan19g0463 1051 PRINTS P-type cation-transporting ATPase superfamily signature 614 625 - -
Lan19g0463 1051 PRINTS P-type cation-transporting ATPase superfamily signature 636 646 - -
Lan19g0463 1051 PRINTS P-type cation-transporting ATPase superfamily signature 720 739 - -
Lan19g0463 1051 PRINTS P-type cation-transporting ATPase superfamily signature 744 756 - -
Lan19g0463 1051 Gene3D - 380 621 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0463 Lan-Chr19 6399538 6405534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0463 3 1051 Primary Pumps ATPases(2) AT1G07810 80.190 0.0 1722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0463 K01537 - gmx:100788807 1837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0443 9 6706774 6712494 Lan19g0463 19 6399538 6405534 LSH
Lan5g0325 5 5487279 5492433 Lan19g0463 19 6399538 6405534 LSH