Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0452 ATGGCTCACTTCTATATGTTTTTTGCCACTTTCTCTTTAGCCTTACTTTGTTTAGCAACTAGGGTTGGTAATGAGATCAACGTTAAATTTCAGCTTCAAATACAGGAAAGTAATGATACCGAGTGGAAGAAGCCTTTTGCTGGTTCATCCCATGCAAAGGGTATTGTCCTGGAAAAGATAGGTATTGAGGCTAAGCAGCCCAATTCTGCCATTCGTAAATGTGCCAGGGTTCAACTCATTAAAAATGGAAAGAAGATTGCTGCATTTGTGCCAAATGATGGCTGCTTAAACTACATTGAGGAAAATGATGAAGTCTTGATCGCTGGATTTGGACGAAAAGGTCATGCTGTGGGTGATATTCCTGGAGTCAGATTCAAGGTTGTGAAGGTCTCTGGTGTATCTCTCCTGGCTCTTTTTAAGGAGAAGAAAGAGAAGCCAAGGTCTTAA 447 0.4094 MAHFYMFFATFSLALLCLATRVGNEINVKFQLQIQESNDTEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0452 148 ProSitePatterns Ribosomal protein S12 signature. 65 72 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lan19g0452 148 PANTHER BNACNNG03140D PROTEIN 38 148 - -
Lan19g0452 148 Gene3D - 31 148 IPR012340 -
Lan19g0452 148 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 38 148 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lan19g0452 148 TIGRFAM uS12_E_A: ribosomal protein uS12 41 147 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lan19g0452 148 SUPERFAMILY Nucleic acid-binding proteins 43 146 IPR012340 -
Lan19g0452 148 CDD Ribosomal_S23 40 145 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lan19g0452 148 Pfam Ribosomal protein S12/S23 40 147 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0452 Lan-Chr19 6242827 6245435 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0452 40 148 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 99.083 1.98e-75 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0452 K02973 - dcr:108220553 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0338 5 5984449 5986188 Lan19g0452 19 6242827 6245435 LSH
Lan19g0452 19 6242827 6245435 Lan20g1054 20 11625032 11626620 PCT
Lan20g1054 20 11625032 11626620 Lan19g0452 19 6242827 6245435 PCT