Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0442 ATGGGGAAGAAGGGAAATTGGTTTTCTAGTGTGAAGAAAGCTCTCAGCCCTGATTCAAAGGACAAGAAAGAACAGAAATCGAGTAAATCTAAGAAGAAATGGTCTGGGAAGAAAAAATTGGAGGCTTTAGGCTCATACTCAGGAACTGATAAAACATCACATCTTCCTCCACCAGATGAGATTAAATTAACTCACCATGAAAATGAAAACATTCATGATAATGTTGTTGAAGTTGCAACAACCATGGTTGCTGAGGAGCCTGTTCTAGTTCCTGCTGTTCAAACAACAGCTGCTAGTGTTGAAGGTGCTAAAATTGCTCGGTTTGCCGATAAACCAAGGGATGAAGTGGCAGCAATCAAGATTCAAACAGCTTTTCGGAGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGAGGGCTGGCGAGGTTGAAATCATTGATGGCAGATCCCATTGTAAAACGTCAAGCCACGAGTACCCTCCGCTCTATGCAGACATTATCACGCGTGCAATCACAGATTCGTTCTAGGAGGATCAGAATGTTAGAAGAGAATCAAGCTCTGCAGAGACAGCTCTTACAGAGGCATGCAAACGAGCCTGAGAGTATGCAGATTGGAGGGGAATGGAATGATAGCTTACAATCTAAAGAACAAATTGAAGCCAAATTGCTAAGCAAGTATGAGGCTGCTATGAGAAGAGAAAGAGCATTGGCTTATGCATTCACTCGTCAGAAAAACGGGAAGAATACATGTAGATCTATAAATCCAATGTTCATGGATCCAACCAATCCAAGCTGGGGTTGGAGTTGGTTGGAACGATGGATGGCAGCGCAGAGTTGGGAGACCCATAGCCCGATGAATAAAGGTTTGAACGACCGCTCATCTGTACGAAGCTCAAGCCACAACATTACTGGTGCAGAAATCAGCAAATCATTTGTGCGTTTTCAGCTCAATTCTGAAAAGCATTCTCCAACAGGCAGCCAAAATCATGTCTCGCCCAACTTTCAGTCCCATCCAACTTCTTTCAAGCCACCTTCTCTGTCAGTTGCTATGAAACTGAAGAAGGCGATCTCAAAGGGAGGTTTGGTTATGGATGATGACTCCAAAAGCATGGTCAGTGTACAGTCAGACTTGTTCCGTAGGTATTCCATCCCGATTTCATCAGTGAGAGATAACGAGAGCCTTGCTATGTCTCCGCCCGTTCCAAGTTACATGGTGCCAACTCATTCTGCAAAAGCTAAGTCCAGGACACAAAGTCCATTAGCCACCGAAAATGGTCAAGCAGAGAAAGGATCCTTTGGGACTGCGAAGAAACCTCTTTCTTACCCTGCTTCACCTGCCATGCAAAAAAGGCATTCAGGTCCACCAAAGGTAGAAAGCAGCTTAGATGCAGAATTCACTATGAGCAATGGTGTGGCCAAATGA 1422 0.443 MGKKGNWFSSVKKALSPDSKDKKEQKSSKSKKKWSGKKKLEALGSYSGTDKTSHLPPPDEIKLTHHENENIHDNVVEVATTMVAEEPVLVPAVQTTAASVEGAKIARFADKPRDEVAAIKIQTAFRRYLARRALRALRGLARLKSLMADPIVKRQATSTLRSMQTLSRVQSQIRSRRIRMLEENQALQRQLLQRHANEPESMQIGGEWNDSLQSKEQIEAKLLSKYEAAMRRERALAYAFTRQKNGKNTCRSINPMFMDPTNPSWGWSWLERWMAAQSWETHSPMNKGLNDRSSVRSSSHNITGAEISKSFVRFQLNSEKHSPTGSQNHVSPNFQSHPTSFKPPSLSVAMKLKKAISKGGLVMDDDSKSMVSVQSDLFRRYSIPISSVRDNESLAMSPPVPSYMVPTHSAKAKSRTQSPLATENGQAEKGSFGTAKKPLSYPASPAMQKRHSGPPKVESSLDAEFTMSNGVAK* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0442 473 PANTHER IQ-DOMAIN 5-RELATED 1 467 - -
Lan19g0442 473 MobiDBLite consensus disorder prediction 1 62 - -
Lan19g0442 473 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 467 - -
Lan19g0442 473 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515
Lan19g0442 473 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Lan19g0442 473 MobiDBLite consensus disorder prediction 405 473 - -
Lan19g0442 473 MobiDBLite consensus disorder prediction 409 429 - -
Lan19g0442 473 SMART iq_5 113 135 IPR000048 GO:0005515
Lan19g0442 473 Pfam Protein of unknown function (DUF4005) 395 453 IPR025064 -
Lan19g0442 473 Gene3D iswi atpase 112 138 - -
Lan19g0442 473 MobiDBLite consensus disorder prediction 319 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0442 Lan-Chr19 6137682 6141681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0442 1 472 IQD Protein Family AT5G03040 48.255 5.26e-124 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0442 - - gmx:100800080 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0340 5 6008884 6014006 Lan19g0442 19 6137682 6141681 LSH
Lan19g0442 19 6137682 6141681 Lan20g1057 20 11693385 11697048 PCT
Lan20g1057 20 11693385 11697048 Lan19g0442 19 6137682 6141681 PCT