LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan19g0440	ATGGCGAACGACTCGTCGTTTTTATTCGCCGGAATTCGTTTTGATAGAAAGAAATTCGCCACCGATATTTCCAAGTTTCAGAAAAAAGATAGCGACAGTTTCGTCAATGTTACGAGCTCGATTGAACTTGAAACCGAGAAACTGGAGGAACCGGTGAAAGAGAAACCACCGTCGTTGAAGAAGAGAAAGCGCAAGGGAACCTCCTCTTCCGAAAAAGAAGAAGCTGTTGAGGGATTCAGTGTGTTTAGAAAATCAACAACTGAAAAGAAACAAGTAAAGAAATCAAATGATGATGAAGATGATGAGTCAATTCAGCTTAAGAAAGAACAAAATATACAACTTGAGCGTGACTCTCTGTTCAGGAAGAAGCATAACATTCATGTTTCTGGGTTTAATGTACCATCCCCGCTTGAAAATTTTGATGAATTGAAATCAAGATACAAATGTAAGTCATATTTATTGCGGAATCTAGCAGAACTTGGATTCAAAGAACCAACACCAATCCAAAGGCAGGCTATTCCAGTACTTTTACATGGCCGTGAATGCTTTGCTTGTGCCCCAACTGGCTCTGGAAAAACCTTTGCATTTGTCTGCCCGATGCTTATGAAGCTTAAGGATCCAGCAAAAGATGGAATTCGAGCTCTTATTGTTTGTCCTACCCGTGAATTATCTGCACAAACATATCGAGAGTGCAAAAAGCTGGCTAAAGGAAATAAATTTCGTATCAAGTTAGTGACTAAACAGCTTATGAGAAATGCGGATTTTTCAAAATTTACATGTGATGTACTTATATCCACCCCACTTCGATTACGCTTTGCTACCCGGAGGAAAAAGATTGATCTCAGCAGAGTTGAGTATCTTGTCCTGGATGAATCTGATAAGCTATTTGAGCCTGTATTATTTAAGCAGATTGATACTATTATCAAAGCATGCTCGAACCCCTCAATAATACGCTCACTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGAACGAGCTAGAGAACTCATGCATGATGCTGTTCGGGTGATTGTTGGCAGGAAGAATATGGCTTCTGAAACAATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTCGCAATTCGTCAAATCTTTGCTGAGAGTCTAAAACCTCCAGTGTTGGTCTTTGTCCAAAGCAAGGAGCGAGCAAAGGAGCTTTATGGTGAACTTGCATTTGACAACATTAGAGTTGATGCTGTCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCCGTTGATAACTTCAGAGCTGGAAAGACATGGGTTTTGATTGCAACTGATGTAGTTGCTCGAGGCATGGATTTCAAAGGCGTGAACTGTGTGATCAATTATGATTTCCCAGATTCTGGTGCTTCATATGTCCATAGGATTGGTCGTTCTGGCAGAGCAGGGAGAAGCGGAGAAGCGATTACTTTTTACACAGAAGACGATATCCCATTCCTTCGGAATATAGCGAATCTGATGGCAGCATCAGGCTGTGAGGTTCCAGCCTGGCTCATGGACTTGCAGAAAAAGAAGTGGAAGAAACACAGGCCAAAAAGAGATGCAATTTCAACCAAAGCAAAGGTATAA	1608	0.4067	MANDSSFLFAGIRFDRKKFATDISKFQKKDSDSFVNVTSSIELETEKLEEPVKEKPPSLKKRKRKGTSSSEKEEAVEGFSVFRKSTTEKKQVKKSNDDEDDESIQLKKEQNIQLERDSLFRKKHNIHVSGFNVPSPLENFDELKSRYKCKSYLLRNLAELGFKEPTPIQRQAIPVLLHGRECFACAPTGSGKTFAFVCPMLMKLKDPAKDGIRALIVCPTRELSAQTYRECKKLAKGNKFRIKLVTKQLMRNADFSKFTCDVLISTPLRLRFATRRKKIDLSRVEYLVLDESDKLFEPVLFKQIDTIIKACSNPSIIRSLFSATLPDFVEERARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQIFAESLKPPVLVFVQSKERAKELYGELAFDNIRVDAVHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSGASYVHRIGRSGRAGRSGEAITFYTEDDIPFLRNIANLMAASGCEVPAWLMDLQKKKWKKHRPKRDAISTKAKV*	536

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan19g0440	535	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	6	532	-	-
	Lan19g0440	535	Pfam	DEAD/DEAH box helicase	166	330	IPR011545	GO:0003676\|GO:0005524
	Lan19g0440	535	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	371	515	IPR001650	-
	Lan19g0440	535	CDD	SF2_C_DEAD	355	485	-	-
	Lan19g0440	535	CDD	DEADc_DDX52	153	346	IPR044764	GO:0003724\|GO:0005524\|GO:0030490
	Lan19g0440	535	SMART	ultradead3	161	358	IPR014001	-
	Lan19g0440	535	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 57	6	532	-	-
	Lan19g0440	535	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	142	170	IPR014014	GO:0003724
	Lan19g0440	535	Gene3D	-	80	342	IPR027417	-
	Lan19g0440	535	Gene3D	-	343	520	IPR027417	-
	Lan19g0440	535	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	173	343	IPR014001	-
	Lan19g0440	535	SMART	helicmild6	395	476	IPR001650	-
	Lan19g0440	535	MobiDBLite	consensus disorder prediction	64	108	-	-
	Lan19g0440	535	Pfam	Helicase conserved C-terminal domain	368	476	IPR001650	-
	Lan19g0440	535	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	210	496	IPR027417	-
	Lan19g0440	535	MobiDBLite	consensus disorder prediction	45	108	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan19g0440	Lan-Chr19	6118635	6123633	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan19g0440	136	514	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.021	4.61e-58	197

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan19g0440	K14779		-	gmx:100800969	833.172