Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0435 ATGGGGCATAGACACTTTTATAATACAACTCCAACATTTGAGGGCGAGCCTGACCAGAATTGGAATCATATGCATGCAGATCAACATCATGTGCACCTTGGTATGCCTAACACTTCAGAAAATGGTTCGTTTATTTATCCTGTGGAAAGTATGTCTTCAGATAGTGTTTCTTTCCCCTCTCATTGGAACTCTACCACAAGCTCAAATGGATACGCATTATCAACTCCCAACATTGAAGTACCTCCTCATCAATCGGATGCATCGGGCACTTCTAATAATCATTTTATGCATTCGTCTAGTGCTGGAGCTTTCTTTGCAGTGTCTGAAAATTATGAACATCAGCCTTCTTCCGGTTATGACGGGCAATCATTTCATTGTAATGGTGGTTTTATTGATCTTACAGTAGGAAGTGGAAGAGGGACTCACAAGCGTAAGAGCCCTGGAATTTCTCCAGTATTTGAGAGAGGTAGTACAAGCAGATACTTCAACGCTGGGAGTTCAACTGATCATCATATATCTTCAGAACTACGGCCAGAAAAGCCAAATATAGATTCCCAATATATGCCTTGGGATCATCTTACTATGACACCCACATTCAGAGGTGGTGGCCTTTCGATTAGGGGTGAGAGTTCTTTAAGGAATGTGAGGAGTCGTTCTGCACTGGATTTGGAATCCAACCTTGCTAGGACCCATTTATCCAGTAATCATTTGCACAACTCCTACTCTGCTGACCTCCCAGTTGAGCATTCTAGCATGGTAGATCTTTCAGGTCAGACTTCTAGTGCTTTGGCGAGGGATTGGAGGCAAATGAGTATATCTCCTGCTCATGGAAGGGTAATATTACCAGATACAAGTGCTTTCAGTCTTGAGGCAAGTCATTTCCTTATTGGACATGGTACTACTACTGCTAGTAATGCTTCCATAGATGTTGGGGCTTTCCATCCGGAACAACCTAGTACAAGCAGAAACCCTCCCGCTCCTCAAAATCTTCACCACCATCTGACTCAGACTGCTAGGGGAGTTAGAAGTAATTATTCTCAGAGATCCACTCCATCTTTTAGGGCTTCTCCAGGCTTATGCTTGGGATATGTGACTTCTTCAGATGATGGATTGCCTATGGTAGCTGAAAATTACCCTTCTAGACATCCAAGGCCGCCCACCACCAGTCGCTGGCGGAACAATGATAGAAATGGGAGGTCAAGAGTATCTAGTGATAGACACCGATCATTGATTAACGAGGGTTTCATTGCTGTTGAGCGTGCTTCACTTTATGGTTCTAGGAACATGCTTGACCAGCACAGAGATATGAGGATGGACATAGACAACATGAGTTATGAGGAACTACTTGCACTTGGGGAGAGAATTGGCCATGTGAGCACAGGATTGTCTGAAGATATGCTTTCTAAGTGCTTGACTGAATCAATATATTGTTCATCTGACCAAACCCAAGATGAAGCAACCTGTGTAGTCTGCCTCGAAGAATATAAGAACATGGACGATGTTGGGACACTTAAAACTTGTAAACATGACTACCATGTTAGCTGCATTAAAAAGTGGTTATCTATGAAGAAAATATGTCCTATCTGCAAAGCTTCTGCTATGCCTGAAGATACAAAGGATAAATAA 1626 0.4268 MGHRHFYNTTPTFEGEPDQNWNHMHADQHHVHLGMPNTSENGSFIYPVESMSSDSVSFPSHWNSTTSSNGYALSTPNIEVPPHQSDASGTSNNHFMHSSSAGAFFAVSENYEHQPSSGYDGQSFHCNGGFIDLTVGSGRGTHKRKSPGISPVFERGSTSRYFNAGSSTDHHISSELRPEKPNIDSQYMPWDHLTMTPTFRGGGLSIRGESSLRNVRSRSALDLESNLARTHLSSNHLHNSYSADLPVEHSSMVDLSGQTSSALARDWRQMSISPAHGRVILPDTSAFSLEASHFLIGHGTTTASNASIDVGAFHPEQPSTSRNPPAPQNLHHHLTQTARGVRSNYSQRSTPSFRASPGLCLGYVTSSDDGLPMVAENYPSRHPRPPTTSRWRNNDRNGRSRVSSDRHRSLINEGFIAVERASLYGSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDMLSKCLTESIYCSSDQTQDEATCVVCLEEYKNMDDVGTLKTCKHDYHVSCIKKWLSMKKICPICKASAMPEDTKDK* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0435 541 MobiDBLite consensus disorder prediction 137 157 - -
Lan19g0435 541 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 537 - -
Lan19g0435 541 ProSiteProfiles Zinc finger RING-type profile. 488 530 IPR001841 -
Lan19g0435 541 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 537 IPR045191 GO:0061630
Lan19g0435 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 453 535 IPR013083 -
Lan19g0435 541 Pfam Ring finger domain 487 530 IPR001841 -
Lan19g0435 541 MobiDBLite consensus disorder prediction 376 406 - -
Lan19g0435 541 SMART ring_2 488 529 IPR001841 -
Lan19g0435 541 SUPERFAMILY RING/U-box 478 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0435 Lan-Chr19 5995007 6002726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0435 1 540 C3H Transcription Factor Family AT2G37150 40.036 1.22e-107 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0435 - - gmx:100803627 828.935