Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0431 ATGGCAACTCAAGCTGAAGGTACAAGTACCACTCCCATCACACCTGATACTGATACCCCAATTCTCAAGGGTGTAGAATCAACTGAAATAACTGAAGAACTCCCTAGTAGACAACAACAACAACAACAACAACAACAACAACATGAGAGAAGGCAAAACCTTATCTTGGAGATTCCCACACAAAAATTGGATGAAGCAAAAGAGAATATTTTCAGGATAAACACTCCTCCAAAGGGAGAGATTTTCTCCCCTTTATCCAGAAGCAATGACTTCCCAGGTCCTTCAACAAAAAATAAATCAACTGTTAATACAGCCCTTATTCCAAAACTCGGTTTTAAATTTCACATGAGTTCAGATATTGAAAAGGCTTCAACGCTAGCACTTGAAGGTTCACCACCACCAAAAAATCCTACGATTTCAAGGACGTTATCTCTTACAAAGTTGATCGGCACCGCTAGTGGGAATAAATTGTCATCCTTACCGGTAACTCCAATTGCTCAGTCAAATCCAGAGTCTGCACATGGAGGGAACATAGCCTATTCAGCAACATCTGTTAAAAAAGGACAGCAATTACCGATTCATCGCTCCCGTTCAGTTCCTGTGCTTACTAAACTTGGGAACACATCTGTAGGTAGCATGTTCCGTGTAGTTCCAACAACACCGCGGTTCTCTGGGATTATTGCCACAACATCTATGAAATCTCCACCTGATGATACTGTTGAAAATTCGGACGGGGAAGATATTCCTGAAGAAGAAGCTGTATGCAGAATTTGTTTGATTGAATTAGGAGAAGGTGGTGATACACTTAAAATGGAATGCAGCTGCAAAGGTGAACTTGCACTGGCACACCAAGAATGTGCAGTTAAATGGTTTAATGTTAAAGGCAATAGAATATGTGATGTATGCAAGAAGGAAGTTCAGAACTTACCTGTCACACTTCTAAGAGTTCCAAGTGCCCAAGGACTTAACTTTTTAGGGAGCAGACAACAGTACAGACAAGGGGTCTGTCAAAATGTTCCTGTTCTTGTCATTATCAACATGCTGGCTTACTTTTGTTTTCTTGAACAGCTTCTCATTTCGAGGATGGGATCTAGCGCCACTGCCATATCTATTCCATTTTCTTGTATAGTTGGTCTTCTTGCTAGCATGACATCCACAACAATAGTTAGGAGAAGCCATATTTGGGTTTATGCAACTTCCCAGTTCGCTATGGTGGTTCTTGCCGGACGACTTTTCTACACTCTGCTTCCTAAACAAGCTGTTGTTCTATGTATCCTACTTTCTACATTTACTGGGTTTGGAGTTGCAATGTGTGGAGCTACTATTCTGAGTGAGTTTTTGAAGTGGAGAAGAAGGGTTGCTCAGTTGAATCAGCAGCATGGTTCCCAAGAGGTGCTACCTTCTGATCAAACATCAGTAGCAACCATTCATCAATCTCAGATGGATTCACAACAACATCAAGAAAGTAATATGGGAGAGACATTGCACCGCGCAAGCTAA 1500 0.4133 MATQAEGTSTTPITPDTDTPILKGVESTEITEELPSRQQQQQQQQQQHERRQNLILEIPTQKLDEAKENIFRINTPPKGEIFSPLSRSNDFPGPSTKNKSTVNTALIPKLGFKFHMSSDIEKASTLALEGSPPPKNPTISRTLSLTKLIGTASGNKLSSLPVTPIAQSNPESAHGGNIAYSATSVKKGQQLPIHRSRSVPVLTKLGNTSVGSMFRVVPTTPRFSGIIATTSMKSPPDDTVENSDGEDIPEEEAVCRICLIELGEGGDTLKMECSCKGELALAHQECAVKWFNVKGNRICDVCKKEVQNLPVTLLRVPSAQGLNFLGSRQQYRQGVCQNVPVLVIINMLAYFCFLEQLLISRMGSSATAISIPFSCIVGLLASMTSTTIVRRSHIWVYATSQFAMVVLAGRLFYTLLPKQAVVLCILLSTFTGFGVAMCGATILSEFLKWRRRVAQLNQQHGSQEVLPSDQTSVATIHQSQMDSQQHQESNMGETLHRAS* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0431 499 MobiDBLite consensus disorder prediction 75 100 - -
Lan19g0431 499 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 14 494 - -
Lan19g0431 499 MobiDBLite consensus disorder prediction 227 246 - -
Lan19g0431 499 MobiDBLite consensus disorder prediction 1 50 - -
Lan19g0431 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 310 IPR013083 -
Lan19g0431 499 Coils Coil 495 499 - -
Lan19g0431 499 SUPERFAMILY RING/U-box 251 306 - -
Lan19g0431 499 MobiDBLite consensus disorder prediction 31 50 - -
Lan19g0431 499 ProSiteProfiles Zinc finger RING-CH-type profile. 247 309 IPR011016 GO:0008270
Lan19g0431 499 MobiDBLite consensus disorder prediction 477 499 - -
Lan19g0431 499 MobiDBLite consensus disorder prediction 1 17 - -
Lan19g0431 499 CDD RING_CH-C4HC3_MARCH 255 303 - -
Lan19g0431 499 SMART ringv_2 254 303 IPR011016 GO:0008270
Lan19g0431 499 Pfam RING-variant domain 255 302 IPR011016 GO:0008270
Lan19g0431 499 PANTHER OS02G0165000 PROTEIN 14 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0431 Lan-Chr19 5909728 5915672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0431 240 309 C3H Transcription Factor Family AT2G37950 36.620 7.59e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0431 - - gmx:100789854 553.518