Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0427 ATGGCGGAAGAGCACCGTTGCCAACAAGCACCAGAAGGTCACAGACTCTGTGCCAATAACTGCGGTTTCTTCGGTAGCCCAGCCACCATGAATCTCTGCTCCAAATGCTTCCGACAAATTCAATCCAACGAACAAGAACAAGCCAAAACCAAATCCACTATCCAATCCGCTCTATCCTCCTCCGCCGCCACAACCACCACCGTTGAATCTCTCCTGGTAACCGTCGATTCCATTCCTCAATCGCAGGTATTGAATTCCCCGAAGATCGAACCATCCGATTCAGTTTCCGCGTCCGTACTATCCGGTTCGACCGGACCGGTTGTTGTTCCGGTTCAATCGAACCGTTGTGCGACGTGCAGAAAGCGCGTGGGTCTCACCGGGTTCAAGTGCAAGTGTGGGGTTACCTTTTGTGGGGCCCACAGGTATCCAGAGAAGCACGCGTGTGGGTTTGATTTCAAGGCGATGGGGCGAGAGGAAATAGCGCGTGCGAATCCTGTTATCAAAGCTGAGAAGCTCGACAAGATTTAA 528 0.5227 MAEEHRCQQAPEGHRLCANNCGFFGSPATMNLCSKCFRQIQSNEQEQAKTKSTIQSALSSSAATTTTVESLLVTVDSIPQSQVLNSPKIEPSDSVSASVLSGSTGPVVVPVQSNRCATCRKRVGLTGFKCKCGVTFCGAHRYPEKHACGFDFKAMGREEIARANPVIKAEKLDKI* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0427 175 Pfam A20-like zinc finger 15 38 IPR002653 GO:0003677|GO:0008270
Lan19g0427 175 SMART A20_3 14 38 IPR002653 GO:0003677|GO:0008270
Lan19g0427 175 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 175 - -
Lan19g0427 175 SUPERFAMILY AN1-like Zinc finger 109 170 IPR035896 -
Lan19g0427 175 SMART AN1_Zf_4 116 153 IPR000058 GO:0008270
Lan19g0427 175 Pfam AN1-like Zinc finger 116 152 IPR000058 GO:0008270
Lan19g0427 175 Gene3D - 92 171 IPR035896 -
Lan19g0427 175 Gene3D - 1 64 - -
Lan19g0427 175 ProSiteProfiles Zinc finger AN1-type profile. 110 156 IPR000058 GO:0008270
Lan19g0427 175 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 175 - -
Lan19g0427 175 ProSiteProfiles Zinc finger A20-type profile. 11 45 IPR002653 GO:0003677|GO:0008270
Lan19g0427 175 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 16 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0427 Lan-Chr19 5820963 5821788 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0427 1 175 C2H2 Transcription Factor Family AT3G52800 50.000 2.40e-48 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0427 - - gmx:100527251 218.009