Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0423 ATGCTCCAAAAAACCTACATTTTACTTATATTCTATGGTCTTGCTTACTTTTTACCACTTGGAACATCAATGCTGAACTTAACTCTTCCAGGAACACACCCTGACCCTGAAGCTGTTGCTCATGAAGTTCATAGGAAGATTAATGCTTCAATCACAAGAAGAGAAATGCTAGCATTATCACAGAAAGATGAATCATCATGCCTAACAGGTAACCCAATTGATGATTGTTGGAAATGTGACCCAGATTGGCCCAACAACCGTCAAAGGCTAGCAGATTGTGCCATTGGGTTTGGTCAATATGCAAAAGGAGGAAAGGGTGGTGAGTTTTACATTGTTACAGATTCATCAGATAATGATGCTGTTAACCCAAAACCAGGAACACTTAGATATGCAGTGATTCAGAATGAACCACTTTGGATAGTGTTCCCAAGTAACATGATGATTAAGCTTTCTCAAGAGTTGATTTTTAATAGCTATAAGACACTTGATGGGCGTGGTGCTGATGTGCATATTGTGGGTGGAGGGTGCATTACTCTTCAGTTTATAAGCAATGTCATTATACATAATATTCATATCCATCATTGTCATCCCTCGGGGAACACAAACGTGCGGTCAAGCCCAGAGCACTACGGGTATCGCACAGAATCAGATGGTGATGGTATATCAATATTTGGATCAAAGGATTTATGGATTGACCATTGCACCCTTTCACGTTGCAAAGATGGGTTGATAGATGCAGTTATGGGTTCCACTGGGATCACTATATCAAACAACTTCTTCTCTCATCACAATGAAGTAATGCTACTTGGCCATAGTGACCATTACACTCCTGACTCAGGTATGCAAGTCACTATTGCCTTCAATCACTTTGGGGAAGAGCTCGTGCAGCGCATGCCAAGGTGCAGGAGGGGTTACATCCATGTAGTTAACAATGATTTTACCCGGTGGGAGATGTATGCAATTGGTGGCAGTGGAGAACCCACCATCAACAGCCAAGGGAACCGTTACATGGCTCCAACTAACCCTTTTGCTAAGGAAGTTACTAAGAGGGTTGATACGGAGGAAGGAATGTGGAAGGGGTGGAATTGGAGATCTGAGGGTGATATCATGGTTAATGGAGCCTTCTTTGTAGCTTCTGGAGAAGAGGTTGAGGTTAAGTATGAGAAGGCTTATAGTGTCGAGCCTAAATCGGCCGATCGAATAAGTATACTCACCATGTCTGCTGGTGTACTTGGCGTTGCCAGGGACAACAACCTTGGAATGTGGAGCAGAGGACCCAATGGTGAAGGTGATGACATTACAGATTCAGGAGGACTTGAATACTCAGATGAAATGTCCCTTAGTGCAAGGGTTGTTATGCCACCTTTGCTTACTTTCACTATTCTTGTTTCATCTTTTCTGTTGTTGTGTTTTGTGTCTTACAGAATACCATTAGTTGTTATTCTATAA 1449 0.4224 MLQKTYILLIFYGLAYFLPLGTSMLNLTLPGTHPDPEAVAHEVHRKINASITRREMLALSQKDESSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEFYIVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTLDGRGADVHIVGGGCITLQFISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTESDGDGISIFGSKDLWIDHCTLSRCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYTPDSGMQVTIAFNHFGEELVQRMPRCRRGYIHVVNNDFTRWEMYAIGGSGEPTINSQGNRYMAPTNPFAKEVTKRVDTEEGMWKGWNWRSEGDIMVNGAFFVASGEEVEVKYEKAYSVEPKSADRISILTMSAGVLGVARDNNLGMWSRGPNGEGDDITDSGGLEYSDEMSLSARVVMPPLLTFTILVSSFLLLCFVSYRIPLVVIL* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0423 482 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Lan19g0423 482 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Lan19g0423 482 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Lan19g0423 482 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Lan19g0423 482 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Lan19g0423 482 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Lan19g0423 482 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Lan19g0423 482 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Lan19g0423 482 SMART amb_all 145 342 IPR002022 -
Lan19g0423 482 SUPERFAMILY Pectin lyase-like 65 399 IPR011050 -
Lan19g0423 482 PANTHER PECTATE LYASE 18-RELATED 7 429 IPR045032 GO:0030570
Lan19g0423 482 Gene3D - 70 412 IPR012334 -
Lan19g0423 482 PANTHER PECTATE LYASE 12-RELATED 7 429 - -
Lan19g0423 482 Pfam Pectate lyase 155 328 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0423 Lan-Chr19 5691187 5697102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0423 1 476 Polysaccharide Lyase AT3G53190 74.481 0.0 696