Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0420 ATGAAGGTCCAAGATGAACAACAACAACATGATGGTGATATCAATCACATGCAAATGATCAAGTTCAAGGGCAAACGTACAAAGCCTCAAAGACTACCTTCCCTACTTAGGTTACCCATGCCTTCATCATCTATTGATAATTCAGAAGAAGAGAAAGACATGGCAAATTGCTTGATTCTCTTGGCTCGAGGATGCAATCAACAAACACAGAAAACATCCGAGTCATATCACGTGACAACACCTGATCATAACAGAAATAAGAAGCTAGGGTTATACCATTATGAGTGCAAGACTTGTAACAAATGCTTCCCTTCATTCCAAGCACTTGGTGGCCATAGGGCTAGCCACAATAAACCTAAGGCAATTACACAAGATCAAAAGCAAGGAGTTACTAGTTTTGTGCATGATAGGGTTGATCATTATTATGACCCTACAACCACAAGCACTACCTTCACCTTGCAAATACCAAATAATAGGGCTTTGTTTGGTATCAAAACTACAAAGACTACTAATAAATGTAATAAAGTTCATGAGTGCTATATTTGTGGGACTGAGTTTTCATCTGGGCAAGCATTGGGGGGTCATATGAGAAGGCATAGAAGTTTTTTGAGCACAACTTCTACATCAAAAACTTCTTTGAGTGGTGCAAATAATAATGGTGTTGGTGAAAGTCCTCATGAATTTGTAGATGCCAAGAGACCTAGAAATGTTTTGATGTTGGACTTGAATCTTCCAGCACCTGAGGATGATCGTAGAGAAACCAAGTTGCTGTTTCAGTCCAAAGAAAAAGTTATTGTCTTCAATGCAACTTTGGATTGTCATTACTAA 828 0.3853 MKVQDEQQQHDGDINHMQMIKFKGKRTKPQRLPSLLRLPMPSSSIDNSEEEKDMANCLILLARGCNQQTQKTSESYHVTTPDHNRNKKLGLYHYECKTCNKCFPSFQALGGHRASHNKPKAITQDQKQGVTSFVHDRVDHYYDPTTTSTTFTLQIPNNRALFGIKTTKTTNKCNKVHECYICGTEFSSGQALGGHMRRHRSFLSTTSTSKTSLSGANNNGVGESPHEFVDAKRPRNVLMLDLNLPAPEDDRRETKLLFQSKEKVIVFNATLDCHY* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0420 275 MobiDBLite consensus disorder prediction 204 227 - -
Lan19g0420 275 MobiDBLite consensus disorder prediction 1 30 - -
Lan19g0420 275 Pfam C2H2-type zinc finger 93 118 - -
Lan19g0420 275 Pfam C2H2-type zinc finger 176 201 - -
Lan19g0420 275 SMART c2h2final6 177 199 IPR013087 -
Lan19g0420 275 SMART c2h2final6 94 116 IPR013087 -
Lan19g0420 275 MobiDBLite consensus disorder prediction 1 20 - -
Lan19g0420 275 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 45 275 - -
Lan19g0420 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Lan19g0420 275 Gene3D Classic Zinc Finger 92 199 - -
Lan19g0420 275 SUPERFAMILY beta-beta-alpha zinc fingers 93 199 IPR036236 -
Lan19g0420 275 ProSitePatterns Zinc finger C2H2 type domain signature. 179 199 IPR013087 -
Lan19g0420 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 199 IPR013087 -
Lan19g0420 275 MobiDBLite consensus disorder prediction 204 221 - -
Lan19g0420 275 PANTHER ZINC FINGER PROTEIN ZAT5 45 275 - -
Lan19g0420 275 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0420 Lan-Chr19 5542257 5543367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0420 46 275 C2H2 Transcription Factor Family AT2G28200 40.891 9.45e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan19g0420 zf-C2H2_6 1.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0420 - - lang:109356517 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0408 9 5914407 5915612 Lan19g0420 19 5542257 5543367 LSH
Lan5g1146 5 24766127 24767235 Lan19g0420 19 5542257 5543367 LSH