Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0415 ATGGGGTTCAAAAGAACCCTATTTTGGCTCTCTAGCTTTTTCATTTTTCTCTTTTCTATCATCATCTTTCATTATACTACTCCTCCTTTCCCCACCCCTAGCACAACCATTACCCCTAAAGAAATTTTCAATTTTGAGCTAGATAATATATTTCACAAGATTATAAGGCTAAGTGGTGCTCAAGATATTGTGTCCATAGTAACAAGTATTTTGAGAACGCATAAGGATAAATGTGACAAAGCTAAATGGGCTTCTACACTTATTCAAAACTATAATGTGACTCTTGTGCTCATAGTTGACCAACATGGTTGTGGAAACTTTAGTAGTGTGCAAGAAGCAGTTGATGCTGTTCCTGAATCTAGCTCTAATACCACCCTTATCATAATTGATTCTGGTACATACAGGGAGAAGGTAGTGGTACAAGCCAACAAAACAAACTTGATAGTTGAAGGTCAAGGGTACCGTGACACAATAATAGAATGGAATGACACAGCAAATTCCACTGCAGGAACAGCTAATAGCTACTCATTTGGGGTCTTTTCTTCTAAGTTCATTGCTTACAACATTAGCTTCAAGAATGCAGCTCCTCCGCCATCACCGGGAGCGGTGGGGGCACAGGCAGTGGCTCTAAGAGTTAGTGGTGATCAGGCAGCATTTTATGGATGTGGATTTTATGGTGCCCAAGACACACTCAATGATGACAATGGGAGACATTATTTTAAAGAATGTTTCATCCAAGGATCCATTGATTTCATATTTGGAAATGCTAAATCACTTTATGAGGATTGTGCCATAAAGTCTATAGCAAAAGAAGACCCAGATGGGAGAGTGAGTGGGTCAATAACAGCACAAGGAAGGAAATCAATGAAGGAGGAAAGTGGGTTTTCATTTGTGAATTGTAGTATTATTGGAAGTGGAAAAGTGTGGCTTGGAAGAGCTTGGGGAAGTTGTGCTACTGTGGTTTTCTCAACAACATATATGTCTGATGTTGTTTCTTCTGATGGATGGAATGATTGGAGCGATCCCTCTAGAGATCAGAGCGTGTACTTTGGGGAGTATAATTGCGTTGGAAGTGGTGCAAATTATACATCTAGAGTCTCTTATGCAAAGCAACTCATGGATTATGAAGCAATTCCCTATATGAATATTTCGTATATTGATGGAACTGATTGGCTTCTTAATTATTCTCAAAATTAA 1197 0.3893 MGFKRTLFWLSSFFIFLFSIIIFHYTTPPFPTPSTTITPKEIFNFELDNIFHKIIRLSGAQDIVSIVTSILRTHKDKCDKAKWASTLIQNYNVTLVLIVDQHGCGNFSSVQEAVDAVPESSSNTTLIIIDSGTYREKVVVQANKTNLIVEGQGYRDTIIEWNDTANSTAGTANSYSFGVFSSKFIAYNISFKNAAPPPSPGAVGAQAVALRVSGDQAAFYGCGFYGAQDTLNDDNGRHYFKECFIQGSIDFIFGNAKSLYEDCAIKSIAKEDPDGRVSGSITAQGRKSMKEESGFSFVNCSIIGSGKVWLGRAWGSCATVVFSTTYMSDVVSSDGWNDWSDPSRDQSVYFGEYNCVGSGANYTSRVSYAKQLMDYEAIPYMNISYIDGTDWLLNYSQN* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0415 398 Gene3D - 91 397 IPR012334 -
Lan19g0415 398 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 396 - -
Lan19g0415 398 Pfam Pectinesterase 98 388 IPR000070 GO:0030599|GO:0042545
Lan19g0415 398 ProSitePatterns Pectinesterase signature 2. 245 254 IPR033131 -
Lan19g0415 398 PANTHER PECTINESTERASE 14-RELATED 11 396 - -
Lan19g0415 398 SUPERFAMILY Pectin lyase-like 95 392 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0415 Lan-Chr19 5425667 5429454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0415 92 392 Carbohydrate Esterase AT1G05310 55.116 3.43e-117 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0415 - - gmx:100802034 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0415 19 5425667 5429454 Lan8g0391 8 6062812 6066724 PCT
Lan8g0391 8 6062812 6066724 Lan19g0415 19 5425667 5429454 PCT